Variant report

Variant	rs6809691
Chromosome Location	chr3:140877043-140877044
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10470445	0.81[ASN][1000 genomes]
rs1115182	0.93[EUR][1000 genomes]
rs1115183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12494486	0.82[EUR][1000 genomes]
rs13068771	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1511381	0.95[ASN][1000 genomes]
rs1511383	0.95[ASN][1000 genomes]
rs1511385	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1533129	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1912730	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1912731	0.81[EUR][1000 genomes]
rs1949114	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2127098	0.86[EUR][1000 genomes]
rs2169867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2311499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2871782	0.86[EUR][1000 genomes]
rs4683567	0.82[EUR][1000 genomes]
rs4683568	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4683571	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4683573	0.84[ASN][1000 genomes]
rs6439990	1.00[AFR][1000 genomes]
rs6776346	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6798093	1.00[AFR][1000 genomes]
rs6800524	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7613134	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7629077	1.00[AFR][1000 genomes]
rs7632734	0.95[ASN][1000 genomes]
rs9289620	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9289622	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs971084	0.95[ASN][1000 genomes]
rs971085	0.95[ASN][1000 genomes]
rs985627	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9859339	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9876376	0.90[EUR][1000 genomes]
rs995782	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs995784	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9990218	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877550	chr3:140867094-140933231	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140861000-140880000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:140872600-140877200	Weak transcription	Fetal Muscle Leg	muscle
3	chr3:140875200-140878200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:140876000-140878000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:140876600-140878000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:140876600-140878000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:140876800-140878000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

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