Variant report

Variant	rs10470445
Chromosome Location	chr3:140904636-140904637
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140901647..140903413-chr3:140903803..140906538,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1010717	0.83[EUR][1000 genomes]
rs1115183	0.81[ASN][1000 genomes]
rs1154783	0.87[EUR][1000 genomes]
rs12494491	0.89[EUR][1000 genomes]
rs13068771	0.84[ASN][1000 genomes]
rs13092595	0.88[EUR][1000 genomes]
rs1511381	0.81[ASN][1000 genomes]
rs1511382	0.90[EUR][1000 genomes]
rs1511383	0.86[ASN][1000 genomes]
rs1511385	0.86[ASN][1000 genomes]
rs1511386	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1533129	0.86[ASN][1000 genomes]
rs1564257	0.84[EUR][1000 genomes]
rs1567560	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16851121	0.83[EUR][1000 genomes]
rs16851123	0.83[EUR][1000 genomes]
rs1871279	0.86[EUR][1000 genomes]
rs1912730	0.81[ASN][1000 genomes]
rs1949114	0.84[ASN][1000 genomes]
rs2048457	0.83[EUR][1000 genomes]
rs2169867	0.81[ASN][1000 genomes]
rs2169868	0.88[JPT][hapmap]
rs2311499	0.84[ASN][1000 genomes]
rs34199471	0.83[EUR][1000 genomes]
rs4308250	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4683397	0.92[EUR][1000 genomes]
rs4683566	0.90[EUR][1000 genomes]
rs4683568	0.86[ASN][1000 genomes]
rs4683570	0.87[EUR][1000 genomes]
rs4683571	0.84[ASN][1000 genomes]
rs4683572	0.84[EUR][1000 genomes]
rs4683573	0.81[ASN][1000 genomes]
rs56966360	0.83[EUR][1000 genomes]
rs6439984	0.88[JPT][hapmap]
rs6439985	1.00[JPT][hapmap]
rs6800524	0.86[ASN][1000 genomes]
rs6809691	0.81[ASN][1000 genomes]
rs7613134	0.88[ASN][1000 genomes]
rs7632734	0.81[ASN][1000 genomes]
rs7632817	0.84[EUR][1000 genomes]
rs9289620	0.88[ASN][1000 genomes]
rs9289621	0.83[EUR][1000 genomes]
rs9289622	0.84[ASN][1000 genomes]
rs9289623	0.83[EUR][1000 genomes]
rs9289624	0.82[EUR][1000 genomes]
rs9289625	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs9289626	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs971084	0.81[ASN][1000 genomes]
rs971085	0.81[ASN][1000 genomes]
rs985627	0.81[ASN][1000 genomes]
rs9859339	0.84[ASN][1000 genomes]
rs9859870	0.83[EUR][1000 genomes]
rs9864596	0.82[EUR][1000 genomes]
rs995782	0.84[ASN][1000 genomes]
rs995783	0.92[EUR][1000 genomes]
rs995784	0.81[ASN][1000 genomes]
rs9990158	0.83[EUR][1000 genomes]
rs9990218	0.86[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs9990285	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877550	chr3:140867094-140933231	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140898200-140906000	Weak transcription	Fetal Muscle Trunk	muscle

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