Variant report

Variant	rs9289622
Chromosome Location	chr3:140909781-140909782
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140867484..140869090-chr3:140909634..140911456,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10470445	0.84[ASN][1000 genomes]
rs1115183	0.87[ASN][1000 genomes]
rs13068771	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1397798	0.86[JPT][hapmap]
rs1511370	0.86[JPT][hapmap]
rs1511381	0.87[ASN][1000 genomes]
rs1511383	0.92[ASN][1000 genomes]
rs1511385	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1511386	0.85[JPT][hapmap]
rs1533129	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1567560	0.86[ASN][1000 genomes]
rs1912730	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1949114	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2169867	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2169868	1.00[JPT][hapmap]
rs2311499	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4308250	0.86[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs4683568	0.92[ASN][1000 genomes]
rs4683571	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4683573	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6439984	1.00[JPT][hapmap]
rs6439985	0.86[JPT][hapmap]
rs6800524	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6809691	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7613134	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7632734	0.87[ASN][1000 genomes]
rs9289620	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs971084	0.87[ASN][1000 genomes]
rs971085	0.87[ASN][1000 genomes]
rs985627	0.87[ASN][1000 genomes]
rs9859339	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs995782	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs995784	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9990218	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877550	chr3:140867094-140933231	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv14493	chr3:140909357-140911954	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv1835693	chr3:140909441-140910504	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv591891	chr3:140909743-140911331	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140905800-140911400	Weak transcription	Thymus	Thymus

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