Variant report

Variant	rs4683568
Chromosome Location	chr3:140894677-140894678
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140868793..140870941-chr3:140893015..140895317,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10470445	0.86[ASN][1000 genomes]
rs1115183	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13068771	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1511381	0.95[ASN][1000 genomes]
rs1511383	1.00[ASN][1000 genomes]
rs1511385	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1533129	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1567560	0.83[ASN][1000 genomes]
rs1912730	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1949114	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2169867	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2311499	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4308250	0.84[ASN][1000 genomes]
rs4683571	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4683573	0.89[ASN][1000 genomes]
rs6776346	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6800524	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6809691	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7613134	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7632734	0.95[ASN][1000 genomes]
rs9289620	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9289622	0.92[ASN][1000 genomes]
rs971084	0.95[ASN][1000 genomes]
rs971085	0.95[ASN][1000 genomes]
rs985627	0.95[ASN][1000 genomes]
rs9859339	0.92[ASN][1000 genomes]
rs995782	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs995784	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9990218	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877550	chr3:140867094-140933231	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140888200-140897600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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