Variant report

Variant	rs1912730
Chromosome Location	chr3:140879170-140879171
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10470445	0.81[ASN][1000 genomes]
rs1115182	0.89[EUR][1000 genomes]
rs1115183	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12494486	0.86[EUR][1000 genomes]
rs13068771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1397798	0.86[JPT][hapmap]
rs1511370	0.86[JPT][hapmap]
rs1511381	0.95[ASN][1000 genomes]
rs1511383	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1511385	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1511386	0.85[JPT][hapmap]
rs1533129	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1912731	0.85[EUR][1000 genomes]
rs1949114	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2127098	0.84[EUR][1000 genomes]
rs2169867	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2169868	1.00[JPT][hapmap]
rs2311499	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2871782	0.83[EUR][1000 genomes]
rs4308250	0.88[JPT][hapmap]
rs4683567	0.87[EUR][1000 genomes]
rs4683568	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4683571	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4683573	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6439984	1.00[JPT][hapmap]
rs6439985	0.86[JPT][hapmap]
rs6439990	1.00[AFR][1000 genomes]
rs6776346	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6798093	1.00[AFR][1000 genomes]
rs6800524	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6809691	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7613134	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7629077	1.00[AFR][1000 genomes]
rs7632734	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9289620	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9289622	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs971084	0.95[ASN][1000 genomes]
rs971085	0.95[ASN][1000 genomes]
rs985627	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9859339	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9876376	0.87[EUR][1000 genomes]
rs995782	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs995784	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9990218	0.81[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877550	chr3:140867094-140933231	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140861000-140880000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:140878000-140882000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links