Variant report

Variant	rs12494486
Chromosome Location	chr3:140896261-140896262
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1154783	0.94[ASN][1000 genomes]
rs1154784	0.95[ASN][1000 genomes]
rs1154785	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708182	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12494491	0.95[ASN][1000 genomes]
rs12494551	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13068771	0.89[EUR][1000 genomes]
rs13092595	0.85[ASN][1000 genomes]
rs1511382	0.92[ASN][1000 genomes]
rs1511384	0.84[AFR][1000 genomes]
rs1511385	0.87[EUR][1000 genomes]
rs1533129	0.87[EUR][1000 genomes]
rs1871279	0.82[ASN][1000 genomes]
rs1912730	0.86[EUR][1000 genomes]
rs1912731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1949114	0.87[EUR][1000 genomes]
rs2127097	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2127098	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2169867	0.82[EUR][1000 genomes]
rs2311499	0.86[EUR][1000 genomes]
rs2871782	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4683397	0.91[ASN][1000 genomes]
rs4683566	0.95[ASN][1000 genomes]
rs4683567	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683569	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4683570	0.88[ASN][1000 genomes]
rs4683571	0.88[EUR][1000 genomes]
rs59331345	0.81[AFR][1000 genomes]
rs6800524	0.88[EUR][1000 genomes]
rs6809691	0.82[EUR][1000 genomes]
rs73869513	0.82[AFR][1000 genomes]
rs7613134	0.87[EUR][1000 genomes]
rs7621186	0.84[AFR][1000 genomes]
rs7632817	0.91[ASN][1000 genomes]
rs7635370	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs899344	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9289620	0.88[EUR][1000 genomes]
rs9876376	0.81[EUR][1000 genomes]
rs995782	0.87[EUR][1000 genomes]
rs995783	0.91[ASN][1000 genomes]
rs995784	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877550	chr3:140867094-140933231	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140888200-140897600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:140896200-140898200	Enhancers	Fetal Muscle Leg	muscle

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