Variant report
| Variant | rs899344 |
|---|---|
| Chromosome Location | chr3:140897756-140897757 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs1154783 | 0.90[ASN][1000 genomes] |
| rs1154784 | 0.91[ASN][1000 genomes] |
| rs1154785 | 0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11708182 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12494486 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12494491 | 0.91[ASN][1000 genomes] |
| rs12494551 | 0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs13092595 | 0.87[ASN][1000 genomes] |
| rs1511381 | 0.90[EUR][1000 genomes] |
| rs1511382 | 0.94[ASN][1000 genomes] |
| rs1511383 | 0.90[EUR][1000 genomes] |
| rs1871279 | 0.82[ASN][1000 genomes] |
| rs1912731 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2127098 | 0.92[ASN][1000 genomes] |
| rs2871782 | 0.80[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4683397 | 0.93[ASN][1000 genomes] |
| rs4683566 | 0.91[ASN][1000 genomes] |
| rs4683567 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4683569 | 0.94[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4683570 | 0.90[ASN][1000 genomes] |
| rs7632734 | 0.89[EUR][1000 genomes] |
| rs7632817 | 0.89[ASN][1000 genomes] |
| rs7635370 | 0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs971084 | 0.88[EUR][1000 genomes] |
| rs971085 | 0.88[EUR][1000 genomes] |
| rs995783 | 0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877550 | chr3:140867094-140933231 | Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs899344 | ACPL2 | cis | multi-tissue | Pritchard |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:140896200-140898200 | Enhancers | Fetal Muscle Leg | muscle |
| 2 | chr3:140897400-140898200 | Enhancers | Fetal Muscle Trunk | muscle |
