Variant report

Variant	rs2871782
Chromosome Location	chr3:140890184-140890185
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1115183	0.84[EUR][1000 genomes]
rs1154783	0.93[ASN][1000 genomes]
rs1154784	0.94[ASN][1000 genomes]
rs1154785	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11708182	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12494486	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12494491	0.94[ASN][1000 genomes]
rs12494551	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13068771	0.87[EUR][1000 genomes]
rs13092595	0.86[ASN][1000 genomes]
rs1511382	0.93[ASN][1000 genomes]
rs1511385	0.84[EUR][1000 genomes]
rs1533129	0.84[EUR][1000 genomes]
rs1871279	0.81[ASN][1000 genomes]
rs1912730	0.83[EUR][1000 genomes]
rs1912731	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1949114	0.84[EUR][1000 genomes]
rs2127097	0.90[AMR][1000 genomes]
rs2127098	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2169867	0.87[EUR][1000 genomes]
rs2311499	0.90[EUR][1000 genomes]
rs4683397	0.92[ASN][1000 genomes]
rs4683566	0.94[ASN][1000 genomes]
rs4683567	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4683569	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4683570	0.89[ASN][1000 genomes]
rs4683571	0.85[EUR][1000 genomes]
rs6800524	0.85[EUR][1000 genomes]
rs6809691	0.86[EUR][1000 genomes]
rs7613134	0.84[EUR][1000 genomes]
rs7632817	0.92[ASN][1000 genomes]
rs7635370	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs899344	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9289620	0.85[EUR][1000 genomes]
rs985627	0.80[EUR][1000 genomes]
rs9876376	0.85[EUR][1000 genomes]
rs995782	0.84[EUR][1000 genomes]
rs995783	0.92[ASN][1000 genomes]
rs995784	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877550	chr3:140867094-140933231	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140888200-140897600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:140889800-140890800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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