Variant report
| Variant | rs7632817 |
|---|---|
| Chromosome Location | chr3:140891913-140891914 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs1010717 | 0.91[EUR][1000 genomes] |
| rs10470445 | 0.84[EUR][1000 genomes] |
| rs1154783 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1154784 | 0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1154785 | 0.91[ASN][1000 genomes] |
| rs11708182 | 0.91[ASN][1000 genomes] |
| rs12494486 | 0.91[ASN][1000 genomes] |
| rs12494491 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12494551 | 0.91[ASN][1000 genomes] |
| rs13080353 | 0.92[EUR][1000 genomes] |
| rs13092595 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs13092946 | 0.86[EUR][1000 genomes] |
| rs1511382 | 0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1564257 | 0.88[EUR][1000 genomes] |
| rs1567560 | 0.84[EUR][1000 genomes] |
| rs1871279 | 0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1912731 | 0.91[ASN][1000 genomes] |
| rs2127098 | 0.87[ASN][1000 genomes] |
| rs2871782 | 0.92[ASN][1000 genomes] |
| rs4308250 | 0.86[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs4683397 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4683566 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4683567 | 0.91[ASN][1000 genomes] |
| rs4683569 | 0.82[ASN][1000 genomes] |
| rs4683570 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4683572 | 0.87[EUR][1000 genomes] |
| rs7635370 | 0.91[ASN][1000 genomes] |
| rs899344 | 0.89[ASN][1000 genomes] |
| rs9289626 | 0.82[CEU][hapmap] |
| rs9860331 | 0.92[EUR][1000 genomes] |
| rs995783 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877550 | chr3:140867094-140933231 | Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:4)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7632817 | ACPL2 | cis | parietal | SCAN |
| rs7632817 | ACPL2 | cis | multi-tissue | Pritchard |
| rs7632817 | MRPS22 | cis | parietal | SCAN |
| rs7632817 | XRN1 | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:140888200-140897600 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 2 | chr3:140890800-140892400 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
