Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140868793..140870941-chr3:140893015..140895317,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1154783	0.94[ASN][1000 genomes]
rs1154784	0.95[ASN][1000 genomes]
rs11708182	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12494486	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12494491	0.95[ASN][1000 genomes]
rs12494551	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13092595	0.85[ASN][1000 genomes]
rs1511381	0.86[EUR][1000 genomes]
rs1511382	0.92[ASN][1000 genomes]
rs1511383	0.88[EUR][1000 genomes]
rs1871279	0.82[ASN][1000 genomes]
rs1912731	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2127098	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2871782	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4683397	0.91[ASN][1000 genomes]
rs4683566	0.95[ASN][1000 genomes]
rs4683567	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683569	0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4683570	0.88[ASN][1000 genomes]
rs7632734	0.87[EUR][1000 genomes]
rs7632817	0.91[ASN][1000 genomes]
rs7635370	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs899344	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs971084	0.86[EUR][1000 genomes]
rs971085	0.86[EUR][1000 genomes]
rs995783	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877550	chr3:140867094-140933231	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1154785	RBP1	cis	cerebellum	SCAN
rs1154785	ACPL2	cis	multi-tissue	Pritchard

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140888200-140897600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:140893000-140894200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:140893400-140894000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:140893600-140894200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr3:140893600-140894200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr3:140893600-140894400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr3:140893600-140894400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr3:140893600-140894400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:140893600-140894400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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