Variant report

Variant	rs4683397
Chromosome Location	chr3:140899567-140899568
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1010717	0.90[EUR][1000 genomes]
rs10470445	0.92[EUR][1000 genomes]
rs1154783	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1154784	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1154785	0.91[ASN][1000 genomes]
rs11708182	0.91[ASN][1000 genomes]
rs12494486	0.91[ASN][1000 genomes]
rs12494491	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12494551	0.91[ASN][1000 genomes]
rs13080353	0.84[EUR][1000 genomes]
rs13092595	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1511382	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1564257	0.88[EUR][1000 genomes]
rs1567560	0.92[EUR][1000 genomes]
rs1871279	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1912731	0.91[ASN][1000 genomes]
rs2127098	0.87[ASN][1000 genomes]
rs2871782	0.92[ASN][1000 genomes]
rs4308250	0.89[EUR][1000 genomes]
rs4683566	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4683567	0.91[ASN][1000 genomes]
rs4683569	0.82[ASN][1000 genomes]
rs4683570	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4683572	0.88[EUR][1000 genomes]
rs7632817	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7635370	0.91[ASN][1000 genomes]
rs899344	0.93[ASN][1000 genomes]
rs9860331	0.85[EUR][1000 genomes]
rs995783	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877550	chr3:140867094-140933231	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140898200-140906000	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links