Variant report

Variant	rs9289620
Chromosome Location	chr3:140903322-140903323
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140901647..140903413-chr3:140903803..140906538,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10470445	0.88[ASN][1000 genomes]
rs1115182	0.83[EUR][1000 genomes]
rs1115183	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12494486	0.88[EUR][1000 genomes]
rs13068771	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1397798	0.86[JPT][hapmap]
rs1511370	0.86[JPT][hapmap]
rs1511381	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1511383	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1511385	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1511386	0.85[JPT][hapmap]
rs1533129	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1567560	0.86[ASN][1000 genomes]
rs1912730	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1912731	0.87[EUR][1000 genomes]
rs1949114	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2127098	0.82[EUR][1000 genomes]
rs2169867	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2169868	1.00[JPT][hapmap]
rs2311499	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2871782	0.85[EUR][1000 genomes]
rs4308250	0.86[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs4683567	0.88[EUR][1000 genomes]
rs4683568	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4683571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4683573	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6439984	1.00[JPT][hapmap]
rs6439985	0.86[JPT][hapmap]
rs6776346	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6800524	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6809691	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7613134	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7632734	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9289622	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs971084	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs971085	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs985627	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9859339	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9876376	0.82[EUR][1000 genomes]
rs995782	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs995784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9990218	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877550	chr3:140867094-140933231	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140898200-140906000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr3:140901600-140903400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:140902800-140904000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:140903000-140903800	Enhancers	NHEK	skin

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