Variant report

Variant	rs6439996
Chromosome Location	chr3:141013617-141013618
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141011845..141013998-chr3:141030373..141032381,2	MCF-7	breast:
2	chr3:141007649..141010539-chr3:141012059..141015009,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11918978	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3732864	0.82[CHB][hapmap]
rs8800	0.82[CHB][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877551	chr3:140970556-141029860	Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140983600-141021600	Weak transcription	Esophagus	oesophagus
2	chr3:140988200-141022600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:140993200-141014200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:140997200-141013800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:140998600-141013800	Weak transcription	Fetal Brain Male	brain
6	chr3:140999200-141014000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:140999400-141014000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:141009000-141014200	Genic enhancers	Dnd41	blood
9	chr3:141009400-141013800	Weak transcription	HepG2	liver
10	chr3:141011000-141014000	Enhancers	Fetal Heart	heart
11	chr3:141011200-141021000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr3:141011800-141013800	Enhancers	HSMMtube	muscle
13	chr3:141011800-141015000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr3:141011800-141015200	Weak transcription	Fetal Intestine Large	intestine
15	chr3:141012000-141013800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:141012000-141013800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr3:141012000-141013800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr3:141012000-141013800	Weak transcription	Spleen	Spleen
19	chr3:141012000-141014200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr3:141012000-141014400	Weak transcription	Fetal Intestine Small	intestine
21	chr3:141012000-141014400	Weak transcription	Fetal Stomach	stomach
22	chr3:141012000-141021400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr3:141012000-141027200	Weak transcription	Pancreas	Pancrea
24	chr3:141012000-141027400	Weak transcription	Gastric	stomach
25	chr3:141012000-141029800	Weak transcription	Right Ventricle	heart
26	chr3:141012200-141014000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr3:141012200-141014200	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr3:141012200-141021200	Weak transcription	Fetal Muscle Trunk	muscle
29	chr3:141012200-141022400	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr3:141012200-141029800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr3:141012200-141029800	Weak transcription	Brain Germinal Matrix	brain
32	chr3:141012200-141029800	Weak transcription	Left Ventricle	heart
33	chr3:141012400-141014000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr3:141012400-141014000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr3:141012400-141016800	Weak transcription	Fetal Brain Female	brain
36	chr3:141012400-141019200	Weak transcription	Thymus	Thymus
37	chr3:141012600-141013800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr3:141012600-141013800	Active TSS	Brain Cingulate Gyrus	brain
39	chr3:141012600-141014000	Enhancers	HSMM	muscle
40	chr3:141012600-141019200	Weak transcription	Fetal Thymus	thymus
41	chr3:141012800-141013800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr3:141012800-141013800	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr3:141012800-141013800	Weak transcription	Lung	lung
44	chr3:141012800-141014000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr3:141012800-141014000	Active TSS	NHLF	lung
46	chr3:141012800-141014200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr3:141012800-141018200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr3:141013000-141013800	Active TSS	Primary T cells fromperipheralblood	blood
49	chr3:141013000-141013800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
50	chr3:141013000-141013800	Active TSS	Brain Anterior Caudate	brain

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