Variant report

Variant	rs3732864
Chromosome Location	chr3:141010924-141010925
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141005141..141007023-chr3:141009930..141012723,3	K562	blood:
2	chr3:141005261..141007644-chr3:141010777..141012811,2	MCF-7	breast:
3	chr3:141010734..141013328-chr3:141022758..141025785,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155893	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6439996	0.82[CHB][hapmap]
rs9838625	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877551	chr3:140970556-141029860	Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140961200-141012600	Weak transcription	Aorta	Aorta
2	chr3:140979000-141013200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr3:140981200-141013200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:140981200-141013400	Weak transcription	Colonic Mucosa	Colon
5	chr3:140983600-141021600	Weak transcription	Esophagus	oesophagus
6	chr3:140988200-141022600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:140993200-141014200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:140994600-141012400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr3:140994600-141013400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:140996000-141012400	Strong transcription	Thymus	Thymus
11	chr3:140996200-141012400	Strong transcription	Primary T cells from cord blood	blood
12	chr3:140996400-141012800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr3:140997200-141013800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:140998000-141012800	Weak transcription	Primary hematopoietic stem cells	blood
15	chr3:140998200-141012400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr3:140998200-141013400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr3:140998400-141011400	Weak transcription	Liver	Liver
18	chr3:140998600-141012400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr3:140998600-141013800	Weak transcription	Fetal Brain Male	brain
20	chr3:140998800-141012000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr3:140998800-141012600	Strong transcription	Fetal Thymus	thymus
22	chr3:140999200-141014000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:140999400-141014000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr3:141000000-141012200	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr3:141001400-141011400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr3:141003000-141012800	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr3:141004000-141012600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr3:141005400-141011800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr3:141005400-141012000	Strong transcription	Fetal Intestine Small	intestine
30	chr3:141005600-141012000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr3:141005800-141012400	Strong transcription	Fetal Brain Female	brain
32	chr3:141006000-141012800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr3:141006600-141012600	Weak transcription	A549	lung
34	chr3:141007000-141013000	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr3:141007200-141012400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr3:141007400-141011000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr3:141007400-141012200	Weak transcription	Brain Anterior Caudate	brain
38	chr3:141007400-141012400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr3:141007400-141012600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr3:141007400-141013600	Weak transcription	Fetal Kidney	kidney
41	chr3:141007600-141012400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr3:141007600-141012600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr3:141007600-141012600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr3:141007800-141012800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr3:141008000-141011400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr3:141008400-141012400	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr3:141008400-141012600	Weak transcription	HSMM	muscle
48	chr3:141008600-141012400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr3:141008600-141012400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr3:141008600-141012400	Strong transcription	Monocytes-CD14+_RO01746	blood

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