Variant report

Variant	rs9838625
Chromosome Location	chr3:141063953-141063954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1346408	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs1983233	1.00[YRI][hapmap]
rs2871887	0.83[MEX][hapmap];1.00[YRI][hapmap]
rs3732864	1.00[LWK][hapmap]
rs4683600	0.87[MEX][hapmap]
rs6440001	0.81[ASW][hapmap]
rs6765238	0.81[GIH][hapmap]
rs7613516	1.00[ASW][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv460871	chr3:141027614-141074962	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv591893	chr3:141027614-141074962	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141056400-141079400	Weak transcription	A549	lung
2	chr3:141056600-141064200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:141056600-141064800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:141058200-141065000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:141061400-141064400	Enhancers	Duodenum Mucosa	Duodenum
6	chr3:141061800-141065800	Enhancers	Liver	Liver
7	chr3:141062000-141064400	Genic enhancers	Fetal Intestine Large	intestine
8	chr3:141063000-141064200	Weak transcription	K562	blood
9	chr3:141063000-141064400	Genic enhancers	Fetal Intestine Small	intestine
10	chr3:141063000-141064400	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr3:141063000-141065800	Weak transcription	Small Intestine	intestine
12	chr3:141063200-141064600	Enhancers	Colonic Mucosa	Colon
13	chr3:141063200-141065000	Enhancers	HepG2	liver
14	chr3:141063800-141064400	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr3:141063800-141067000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links