Variant report

Variant	rs6765238
Chromosome Location	chr3:141063164-141063165
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141048273..141051741-chr3:141060770..141063565,3	K562	blood:
2	chr3:141058868..141063187-chr3:141079232..141081796,3	K562	blood:
3	chr3:141062498..141065026-chr3:141073519..141075054,2	K562	blood:
4	chr3:141044888..141047671-chr3:141061362..141063749,2	K562	blood:
5	chr3:141061634..141065985-chr3:141070093..141073235,4	K562	blood:
6	chr3:141062244..141063869-chr3:141087306..141089109,2	K562	blood:
7	chr3:141061140..141064164-chr3:141067990..141071593,5	K562	blood:
8	chr3:141047400..141052083-chr3:141058382..141063565,6	K562	blood:
9	chr3:141062169..141064184-chr3:141073494..141075542,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4536797	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683602	0.83[AFR][1000 genomes]
rs9829470	0.81[CEU][hapmap]
rs9838625	0.81[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv460871	chr3:141027614-141074962	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv591893	chr3:141027614-141074962	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6765238	RASA2	cis	parietal	SCAN
rs6765238	RASA2	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141056400-141079400	Weak transcription	A549	lung
2	chr3:141056600-141064200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:141056600-141064800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:141058200-141065000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:141061400-141064400	Enhancers	Duodenum Mucosa	Duodenum
6	chr3:141061800-141065800	Enhancers	Liver	Liver
7	chr3:141062000-141064400	Genic enhancers	Fetal Intestine Large	intestine
8	chr3:141063000-141063200	Flanking Active TSS	HepG2	liver
9	chr3:141063000-141064200	Weak transcription	K562	blood
10	chr3:141063000-141064400	Genic enhancers	Fetal Intestine Small	intestine
11	chr3:141063000-141064400	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr3:141063000-141065800	Weak transcription	Small Intestine	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links