Variant report

Variant	rs6440450
Chromosome Location	chr3:146417695-146417696
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10804718	0.85[ASN][1000 genomes]
rs1511554	0.95[ASN][1000 genomes]
rs1511565	0.97[ASN][1000 genomes]
rs1511566	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1912787	0.97[ASN][1000 genomes]
rs1912788	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1912789	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1912790	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2903965	0.94[ASN][1000 genomes]
rs4681335	0.94[ASN][1000 genomes]
rs6440448	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6440449	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6440451	0.97[ASN][1000 genomes]
rs6774700	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6784712	0.94[ASN][1000 genomes]
rs6796901	0.97[ASN][1000 genomes]
rs6797350	0.97[ASN][1000 genomes]
rs6810372	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7624984	0.99[ASN][1000 genomes]
rs7629838	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7629881	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7640577	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7650609	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7651782	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7651979	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9818011	0.80[AFR][1000 genomes]
rs9835908	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9836760	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9852132	0.92[ASN][1000 genomes]
rs9871947	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9871995	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs994050	0.92[ASN][1000 genomes]
rs994052	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs994053	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516386	chr3:146366513-146758405	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv591961	chr3:146394094-146725217	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1007875	chr3:146401461-146776618	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv877624	chr3:146414837-146536741	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv998040	chr3:146416916-146729962	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv536760	chr3:146416916-146729962	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146409600-146422000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:146415200-146422800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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