Variant report

Variant	rs994050
Chromosome Location	chr3:146410040-146410041
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10804718	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1511554	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1511565	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1511566	0.90[ASN][1000 genomes]
rs1912787	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1912788	0.90[ASN][1000 genomes]
rs1912789	0.90[ASN][1000 genomes]
rs1912790	0.92[ASN][1000 genomes]
rs2903965	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4681335	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6440448	0.95[ASN][1000 genomes]
rs6440449	0.97[ASN][1000 genomes]
rs6440450	0.92[ASN][1000 genomes]
rs6440451	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6774700	0.88[ASN][1000 genomes]
rs6784712	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6796901	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6797350	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6810372	0.89[ASN][1000 genomes]
rs7624984	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7629838	0.97[ASN][1000 genomes]
rs7629881	0.97[ASN][1000 genomes]
rs7640577	0.88[ASN][1000 genomes]
rs7650609	0.91[ASN][1000 genomes]
rs7651782	0.97[ASN][1000 genomes]
rs7651979	0.97[ASN][1000 genomes]
rs9835908	0.95[ASN][1000 genomes]
rs9836760	0.87[ASN][1000 genomes]
rs9852132	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9871947	0.93[ASN][1000 genomes]
rs9871995	0.92[ASN][1000 genomes]
rs994052	0.98[ASN][1000 genomes]
rs994053	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516386	chr3:146366513-146758405	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv591961	chr3:146394094-146725217	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1007875	chr3:146401461-146776618	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146409600-146422000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:146409800-146410400	ZNF genes & repeats	Dnd41	blood
3	chr3:146410000-146410200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:146410000-146410200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

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