Variant report

Variant	rs6441120
Chromosome Location	chr3:156895464-156895465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156347077..156349787-chr3:156893431..156895606,2	K562	blood:
2	chr3:156895373..156897878-chr3:156901628..156904613,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6776668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6797962	1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6806699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv520331	chr3:156858300-156915650	Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156894000-156900800	Weak transcription	Ovary	ovary
2	chr3:156894200-156895600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:156894200-156895600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
4	chr3:156894200-156896200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:156894200-156896200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:156894200-156896200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:156894200-156896200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:156894200-156896200	Weak transcription	Colonic Mucosa	Colon
9	chr3:156894200-156896200	Weak transcription	Fetal Stomach	stomach
10	chr3:156894200-156901600	Weak transcription	Right Atrium	heart
11	chr3:156894200-156903000	Weak transcription	Esophagus	oesophagus
12	chr3:156894400-156895600	Enhancers	HepG2	liver
13	chr3:156894400-156895800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr3:156894400-156902400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr3:156894400-156902800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr3:156894400-156903000	Weak transcription	HSMM	muscle
17	chr3:156894400-156903200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:156894400-156903400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr3:156894400-156903400	Weak transcription	Brain Angular Gyrus	brain
20	chr3:156894400-156903800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr3:156894400-156906400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr3:156894400-156906600	Weak transcription	Right Ventricle	heart
23	chr3:156894400-156906800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:156894600-156895600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:156894600-156895600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:156894600-156895600	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr3:156894600-156895800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr3:156894600-156895800	Enhancers	Colon Smooth Muscle	Colon
29	chr3:156894600-156896000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr3:156894600-156896000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr3:156894600-156900000	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr3:156894600-156902800	Weak transcription	Liver	Liver
33	chr3:156894600-156902800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr3:156894600-156903000	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr3:156894600-156903000	Weak transcription	Duodenum Mucosa	Duodenum
36	chr3:156894600-156903000	Weak transcription	NHLF	lung
37	chr3:156894600-156903800	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr3:156894600-156904000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr3:156894600-156904000	Weak transcription	Osteobl	bone
40	chr3:156894600-156904400	Weak transcription	Adipose Nuclei	Adipose
41	chr3:156894600-156909000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr3:156894800-156895600	Enhancers	Dnd41	blood
43	chr3:156894800-156895800	Enhancers	K562	blood
44	chr3:156894800-156896200	Weak transcription	Fetal Intestine Small	intestine
45	chr3:156894800-156896200	Weak transcription	Fetal Thymus	thymus
46	chr3:156894800-156896600	Weak transcription	NHDF-Ad	bronchial
47	chr3:156894800-156896800	Weak transcription	Thymus	Thymus
48	chr3:156894800-156898800	Weak transcription	Primary T cells from cord blood	blood
49	chr3:156894800-156901600	Weak transcription	Stomach Smooth Muscle	stomach
50	chr3:156894800-156902600	Weak transcription	Placenta Amnion	Placenta Amnion

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