Variant report

Variant	rs6806699
Chromosome Location	chr3:156855614-156855615
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156854811..156856693-chr3:156876042..156877591,2	MCF-7	breast:
2	chr3:156391447..156392172-chr3:156855199..156855865,2	K562	blood:
3	chr3:156165808..156166675-chr3:156854917..156855626,2	K562	blood:
4	chr3:156848498..156851635-chr3:156855250..156858331,3	K562	blood:
5	chr3:156394321..156397041-chr3:156854404..156856931,2	MCF-7	breast:
6	chr3:156855375..156857018-chr3:156858174..156860003,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000243926	Chromatin interaction
ENSG00000163660	Chromatin interaction
ENSG00000163659	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6441120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6776668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6797962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
2	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156848400-156866000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:156848400-156866000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:156848600-156856400	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr3:156848600-156876600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:156849000-156855800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:156849000-156860000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr3:156849000-156861000	Weak transcription	Dnd41	blood
8	chr3:156849000-156861800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr3:156849000-156862400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:156849200-156856000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr3:156849200-156861600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr3:156849200-156861600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr3:156849400-156861600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr3:156849800-156864000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr3:156850000-156860200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr3:156850400-156860800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr3:156850400-156861600	Weak transcription	Hela-S3	cervix
18	chr3:156851000-156861000	Weak transcription	HUVEC	blood vessel
19	chr3:156851400-156856000	Enhancers	Stomach Mucosa	stomach
20	chr3:156852200-156856000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:156852600-156873400	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr3:156852800-156859000	Weak transcription	Lung	lung
23	chr3:156853200-156856000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:156853200-156865400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr3:156853400-156872000	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr3:156853800-156855800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr3:156854000-156861200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr3:156854200-156860200	Weak transcription	Thymus	Thymus
29	chr3:156854800-156855800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr3:156854800-156856000	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr3:156854800-156856000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr3:156854800-156860200	Weak transcription	Esophagus	oesophagus
33	chr3:156855000-156856000	Weak transcription	Left Ventricle	heart
34	chr3:156855000-156860000	Weak transcription	Right Ventricle	heart
35	chr3:156855000-156860200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr3:156855000-156865800	Weak transcription	Aorta	Aorta
37	chr3:156855000-156866000	Weak transcription	Ovary	ovary
38	chr3:156855000-156872000	Weak transcription	Right Atrium	heart
39	chr3:156855200-156855800	Weak transcription	Fetal Muscle Leg	muscle
40	chr3:156855200-156856000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr3:156855200-156856000	Enhancers	Duodenum Mucosa	Duodenum
42	chr3:156855200-156856200	Enhancers	Colon Smooth Muscle	Colon
43	chr3:156855200-156860000	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr3:156855200-156860200	Weak transcription	Small Intestine	intestine
45	chr3:156855200-156861600	Weak transcription	Psoas Muscle	Psoas
46	chr3:156855200-156861800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr3:156855200-156862000	Weak transcription	Pancreas	Pancrea
48	chr3:156855200-156862200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr3:156855400-156855800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
50	chr3:156855400-156855800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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