Variant report

Variant	rs6441175
Chromosome Location	chr3:157857110-157857111
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:157849729..157851539-chr3:157855010..157858229,4	K562	blood:
2	chr3:157856122..157858271-chr3:157860097..157863022,2	K562	blood:
3	chr3:157838685..157841210-chr3:157855039..157857815,2	K562	blood:
4	chr3:157849729..157852576-chr3:157856575..157858121,2	K562	blood:

Variant related genes	Relation type
ENSG00000174891	Chromatin interaction

Extended variants
information (count: 131 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs1070894	0.88[EUR][1000 genomes]
rs1095629	0.88[EUR][1000 genomes]
rs1095630	0.87[EUR][1000 genomes]
rs1095633	0.88[EUR][1000 genomes]
rs1095634	0.89[EUR][1000 genomes]
rs11706229	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11922188	0.81[AMR][1000 genomes]
rs1210358	0.87[EUR][1000 genomes]
rs13060100	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13065148	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13072413	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13086348	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1581412	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1589526	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1589528	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1608968	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1609523	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1609524	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1610269	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1618377	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1624094	0.92[EUR][1000 genomes]
rs1724676	0.88[EUR][1000 genomes]
rs1724677	0.88[EUR][1000 genomes]
rs1724727	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1724728	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1724729	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1729997	0.90[EUR][1000 genomes]
rs1729999	0.90[EUR][1000 genomes]
rs1730043	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1730054	0.88[EUR][1000 genomes]
rs1730100	0.90[EUR][1000 genomes]
rs2682397	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2693528	0.87[EUR][1000 genomes]
rs2693541	0.85[EUR][1000 genomes]
rs4261833	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4271876	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4318510	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4320039	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4320040	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4336069	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4396839	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4410410	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4558712	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4561782	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4679821	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4679823	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4680417	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4680418	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57361244	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6441176	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6441177	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6762154	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6765767	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6768496	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6776109	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6777853	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6777968	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6786057	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6787072	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6802443	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6803342	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs698980	0.89[EUR][1000 genomes]
rs698986	0.89[EUR][1000 genomes]
rs698988	0.88[EUR][1000 genomes]
rs698989	0.88[EUR][1000 genomes]
rs698990	0.88[EUR][1000 genomes]
rs698991	0.88[EUR][1000 genomes]
rs699916	0.88[EUR][1000 genomes]
rs699917	0.88[EUR][1000 genomes]
rs699919	0.87[EUR][1000 genomes]
rs699921	0.89[EUR][1000 genomes]
rs699922	0.89[EUR][1000 genomes]
rs699924	0.89[EUR][1000 genomes]
rs7614091	0.84[EUR][1000 genomes]
rs7617503	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7623107	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7623618	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7628936	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7629021	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7629341	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7629432	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7629518	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7642751	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7645383	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7645475	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7648169	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7651288	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs827090	0.87[EUR][1000 genomes]
rs827091	0.88[EUR][1000 genomes]
rs827118	0.85[EUR][1000 genomes]
rs827120	0.86[EUR][1000 genomes]
rs827121	0.87[EUR][1000 genomes]
rs827122	0.88[EUR][1000 genomes]
rs827123	0.88[EUR][1000 genomes]
rs827125	0.88[EUR][1000 genomes]
rs827136	0.88[EUR][1000 genomes]
rs827143	0.92[EUR][1000 genomes]
rs827148	0.90[EUR][1000 genomes]
rs827150	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs827151	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs827156	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs827158	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs827159	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs827161	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs827169	0.80[EUR][1000 genomes]
rs827172	0.88[EUR][1000 genomes]
rs827175	0.88[EUR][1000 genomes]
rs827187	0.86[EUR][1000 genomes]
rs827188	0.86[EUR][1000 genomes]
rs827802	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs827803	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs827804	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs827806	0.89[EUR][1000 genomes]
rs827807	0.89[EUR][1000 genomes]
rs852110	0.92[EUR][1000 genomes]
rs862351	0.90[EUR][1000 genomes]
rs864859	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9290022	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9811346	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9819408	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9819411	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9838196	0.81[EUR][1000 genomes]
rs9840667	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9846988	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9848977	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9852745	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9855534	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv829768	chr3:157832878-158012070	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157829200-157861400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr3:157830000-157866400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr3:157837600-157877600	Weak transcription	Fetal Heart	heart
4	chr3:157838800-157862600	Weak transcription	Pancreas	Pancrea
5	chr3:157842800-157858000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr3:157842800-157858200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:157843000-157868600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr3:157843600-157857200	Weak transcription	HepG2	liver
9	chr3:157843600-157866200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr3:157843600-157886800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr3:157845800-157857600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr3:157846000-157857400	Weak transcription	Spleen	Spleen
13	chr3:157846000-157860800	Weak transcription	Small Intestine	intestine
14	chr3:157846000-157868400	Weak transcription	Lung	lung
15	chr3:157846000-157869200	Weak transcription	Esophagus	oesophagus
16	chr3:157846200-157857200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr3:157846200-157857200	Weak transcription	Brain Substantia Nigra	brain
18	chr3:157846200-157857400	Weak transcription	NHDF-Ad	bronchial
19	chr3:157846200-157857600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr3:157846200-157857800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr3:157846200-157859200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr3:157846200-157861800	Weak transcription	Colon Smooth Muscle	Colon
23	chr3:157846200-157862800	Weak transcription	Fetal Brain Female	brain
24	chr3:157846200-157869200	Weak transcription	Psoas Muscle	Psoas
25	chr3:157846200-157869200	Weak transcription	NHEK	skin
26	chr3:157846200-157872000	Weak transcription	Primary T cells from cord blood	blood
27	chr3:157846200-157875200	Weak transcription	Gastric	stomach
28	chr3:157846200-157893400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr3:157846200-157893600	Weak transcription	Aorta	Aorta
30	chr3:157846600-157858000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr3:157846600-157867400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr3:157846600-157878600	Weak transcription	HSMM	muscle
33	chr3:157846800-157857200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr3:157846800-157857600	Weak transcription	Brain Cingulate Gyrus	brain
35	chr3:157846800-157860200	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr3:157846800-157860200	Weak transcription	Left Ventricle	heart
37	chr3:157846800-157866200	Weak transcription	Brain Angular Gyrus	brain
38	chr3:157846800-157874000	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr3:157846800-157874600	Weak transcription	Fetal Lung	lung
40	chr3:157846800-157876800	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr3:157846800-157876800	Weak transcription	K562	blood
42	chr3:157846800-157894400	Weak transcription	Brain Hippocampus Middle	brain
43	chr3:157847000-157861600	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr3:157847000-157861800	Weak transcription	Fetal Intestine Large	intestine
45	chr3:157847000-157862200	Weak transcription	Duodenum Mucosa	Duodenum
46	chr3:157847000-157868600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr3:157847000-157873200	Weak transcription	Fetal Muscle Leg	muscle
48	chr3:157847200-157876800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr3:157847800-157869400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr3:157848000-157863800	Weak transcription	Liver	Liver

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