Variant report

Variant	rs827169
Chromosome Location	chr3:157956878-157956879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 134 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs1070894	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1095629	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1095630	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1095633	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1095634	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11706229	0.80[EUR][1000 genomes]
rs1210358	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13060100	0.81[EUR][1000 genomes]
rs13065148	0.85[EUR][1000 genomes]
rs13072413	0.81[EUR][1000 genomes]
rs13086348	0.80[EUR][1000 genomes]
rs1581412	0.80[EUR][1000 genomes]
rs1589526	0.80[EUR][1000 genomes]
rs1589528	0.80[EUR][1000 genomes]
rs1608968	0.82[EUR][1000 genomes]
rs1609524	0.80[EUR][1000 genomes]
rs1610269	0.80[EUR][1000 genomes]
rs1618377	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1624094	0.85[EUR][1000 genomes]
rs1724676	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1724677	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1724727	0.83[EUR][1000 genomes]
rs1724728	0.83[EUR][1000 genomes]
rs1724729	0.83[EUR][1000 genomes]
rs1729997	0.87[EUR][1000 genomes]
rs1729999	0.87[EUR][1000 genomes]
rs1730043	0.83[EUR][1000 genomes]
rs1730054	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1730100	0.87[EUR][1000 genomes]
rs2682397	0.83[EUR][1000 genomes]
rs2693528	0.84[EUR][1000 genomes]
rs2693541	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4261833	0.80[EUR][1000 genomes]
rs4271876	0.81[EUR][1000 genomes]
rs4318510	0.80[EUR][1000 genomes]
rs4320039	0.81[EUR][1000 genomes]
rs4320040	0.81[EUR][1000 genomes]
rs4336069	0.81[EUR][1000 genomes]
rs4396839	0.81[EUR][1000 genomes]
rs4410410	0.82[EUR][1000 genomes]
rs4558712	0.81[EUR][1000 genomes]
rs4561782	0.81[EUR][1000 genomes]
rs4679821	0.80[EUR][1000 genomes]
rs4679823	0.80[EUR][1000 genomes]
rs4680417	0.81[EUR][1000 genomes]
rs4680418	0.80[EUR][1000 genomes]
rs57361244	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6441175	0.80[EUR][1000 genomes]
rs6441176	0.81[EUR][1000 genomes]
rs6441177	0.80[EUR][1000 genomes]
rs6441183	0.84[AFR][1000 genomes]
rs6441184	0.84[AFR][1000 genomes]
rs6762154	0.81[EUR][1000 genomes]
rs6765767	0.86[EUR][1000 genomes]
rs6768496	0.80[EUR][1000 genomes]
rs6776109	0.81[EUR][1000 genomes]
rs6777853	0.80[EUR][1000 genomes]
rs6777968	0.80[EUR][1000 genomes]
rs6786057	0.81[EUR][1000 genomes]
rs6787072	0.81[EUR][1000 genomes]
rs6802443	0.81[EUR][1000 genomes]
rs6803342	0.81[EUR][1000 genomes]
rs698980	0.89[EUR][1000 genomes]
rs698986	0.89[EUR][1000 genomes]
rs698988	0.87[EUR][1000 genomes]
rs698989	0.87[EUR][1000 genomes]
rs698990	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs698991	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs699916	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs699917	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs699919	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs699921	0.89[EUR][1000 genomes]
rs699922	0.89[EUR][1000 genomes]
rs699924	0.89[EUR][1000 genomes]
rs7614091	0.81[EUR][1000 genomes]
rs7617503	0.81[EUR][1000 genomes]
rs7623107	0.81[EUR][1000 genomes]
rs7628936	0.81[EUR][1000 genomes]
rs7629341	0.80[EUR][1000 genomes]
rs7629432	0.84[EUR][1000 genomes]
rs7629518	0.83[EUR][1000 genomes]
rs7637291	0.80[AFR][1000 genomes]
rs7642751	0.80[EUR][1000 genomes]
rs7645383	0.80[EUR][1000 genomes]
rs7645475	0.81[EUR][1000 genomes]
rs7648169	0.81[EUR][1000 genomes]
rs7651288	0.81[EUR][1000 genomes]
rs827090	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs827091	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs827118	0.86[EUR][1000 genomes]
rs827120	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs827121	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs827122	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs827123	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs827124	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs827125	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs827136	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs827143	0.85[EUR][1000 genomes]
rs827148	0.87[EUR][1000 genomes]
rs827150	0.83[EUR][1000 genomes]
rs827151	0.83[EUR][1000 genomes]
rs827156	0.83[EUR][1000 genomes]
rs827158	0.83[EUR][1000 genomes]
rs827159	0.83[EUR][1000 genomes]
rs827161	0.83[EUR][1000 genomes]
rs827172	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs827175	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs827181	0.82[AFR][1000 genomes]
rs827187	0.83[EUR][1000 genomes]
rs827188	0.83[EUR][1000 genomes]
rs827802	0.84[EUR][1000 genomes]
rs827803	0.83[EUR][1000 genomes]
rs827804	0.83[EUR][1000 genomes]
rs827806	0.89[EUR][1000 genomes]
rs827807	0.89[EUR][1000 genomes]
rs852110	0.85[EUR][1000 genomes]
rs862351	0.87[EUR][1000 genomes]
rs864859	0.83[EUR][1000 genomes]
rs9290022	0.82[EUR][1000 genomes]
rs9811346	0.80[EUR][1000 genomes]
rs9819408	0.84[EUR][1000 genomes]
rs9819411	0.84[EUR][1000 genomes]
rs9838196	0.82[EUR][1000 genomes]
rs9840667	0.81[EUR][1000 genomes]
rs9846988	0.80[EUR][1000 genomes]
rs9848977	0.80[EUR][1000 genomes]
rs9852745	0.80[EUR][1000 genomes]
rs9855534	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv829768	chr3:157832878-158012070	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv877689	chr3:157858930-158133307	Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv916910	chr3:157926799-158183372	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157914200-157984400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:157919200-157958000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr3:157920200-157957000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr3:157927000-157968800	Weak transcription	Psoas Muscle	Psoas
5	chr3:157933800-157957200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr3:157936800-157962000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:157938200-157959000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr3:157938200-157961800	Weak transcription	Primary T cells from cord blood	blood
9	chr3:157948200-157970600	Weak transcription	Dnd41	blood
10	chr3:157949400-157970400	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr3:157953400-157960000	Weak transcription	Brain Hippocampus Middle	brain
12	chr3:157953800-157957600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:157953800-157974000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr3:157955400-157967000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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