Variant report

Variant	rs827124
Chromosome Location	chr3:157953918-157953919
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1070894	0.82[EUR][1000 genomes]
rs1095629	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1095630	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1095633	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1095634	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1724676	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1724677	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1729997	0.80[EUR][1000 genomes]
rs1729999	0.80[EUR][1000 genomes]
rs1730054	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1730100	0.80[EUR][1000 genomes]
rs57361244	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs698980	0.81[EUR][1000 genomes]
rs698986	0.81[EUR][1000 genomes]
rs698988	0.80[EUR][1000 genomes]
rs698989	0.80[EUR][1000 genomes]
rs698990	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs698991	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs699916	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs699917	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs699919	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs699921	0.81[EUR][1000 genomes]
rs699922	0.81[EUR][1000 genomes]
rs699924	0.81[EUR][1000 genomes]
rs827121	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs827122	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs827123	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs827125	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs827136	0.80[EUR][1000 genomes]
rs827148	0.80[EUR][1000 genomes]
rs827169	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs827172	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs827175	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs827806	0.81[EUR][1000 genomes]
rs827807	0.81[EUR][1000 genomes]
rs862351	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv829768	chr3:157832878-158012070	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv877689	chr3:157858930-158133307	Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv916910	chr3:157926799-158183372	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157914200-157984400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:157919200-157958000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr3:157920200-157957000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr3:157927000-157968800	Weak transcription	Psoas Muscle	Psoas
5	chr3:157928200-157956200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr3:157933800-157957200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr3:157935800-157955200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr3:157936800-157962000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr3:157938000-157956600	Weak transcription	Primary B cells from cord blood	blood
10	chr3:157938200-157959000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr3:157938200-157961800	Weak transcription	Primary T cells from cord blood	blood
12	chr3:157941400-157955200	Weak transcription	Lung	lung
13	chr3:157948200-157970600	Weak transcription	Dnd41	blood
14	chr3:157949400-157970400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr3:157952200-157956800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:157953400-157960000	Weak transcription	Brain Hippocampus Middle	brain
17	chr3:157953800-157957600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:157953800-157974000	Weak transcription	Rectal Mucosa Donor 29	rectum

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