Variant report

Variant	rs6441511
Chromosome Location	chr3:162236110-162236111
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:162215860..162218810-chr3:162234701..162237384,2	K562	blood:

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1015177	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1031837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1031838	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1031839	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10936294	0.85[ASN][1000 genomes]
rs10936295	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12490335	0.85[ASN][1000 genomes]
rs12629492	0.85[ASN][1000 genomes]
rs13064235	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13433947	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13434303	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1382200	0.85[ASN][1000 genomes]
rs1382201	0.85[ASN][1000 genomes]
rs1382202	0.85[ASN][1000 genomes]
rs1478140	0.85[ASN][1000 genomes]
rs1478141	0.85[ASN][1000 genomes]
rs1478144	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1478148	0.91[ASN][1000 genomes]
rs1478149	0.91[ASN][1000 genomes]
rs1478150	0.91[ASN][1000 genomes]
rs1478151	0.91[ASN][1000 genomes]
rs1531526	0.85[ASN][1000 genomes]
rs1531527	0.85[ASN][1000 genomes]
rs1531528	0.85[ASN][1000 genomes]
rs1542531	0.85[ASN][1000 genomes]
rs1564172	0.85[ASN][1000 genomes]
rs2061734	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2061736	0.88[ASN][1000 genomes]
rs2061737	0.91[ASN][1000 genomes]
rs2061738	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2061739	0.91[ASN][1000 genomes]
rs2169726	0.86[ASN][1000 genomes]
rs3863255	0.85[ASN][1000 genomes]
rs3933788	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3933789	0.91[ASN][1000 genomes]
rs4856698	0.82[EUR][1000 genomes]
rs4856702	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs56239534	0.85[ASN][1000 genomes]
rs58706084	0.85[ASN][1000 genomes]
rs59229774	0.85[ASN][1000 genomes]
rs6441500	0.80[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6441501	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6441508	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6441510	0.87[AFR][1000 genomes]
rs6441513	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6441514	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs67118079	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67203479	0.85[ASN][1000 genomes]
rs67840917	0.85[ASN][1000 genomes]
rs7428032	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7428330	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7429017	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7431428	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7431616	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7433772	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7433829	0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7613585	0.91[ASN][1000 genomes]
rs7635791	0.91[ASN][1000 genomes]
rs7644526	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7646771	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7652839	0.84[AMR][1000 genomes]
rs9283619	0.85[ASN][1000 genomes]
rs9813807	0.86[ASN][1000 genomes]
rs9855439	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9866048	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9868505	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9871703	0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs993390	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs997688	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:38 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877721	chr3:161878713-162303276	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1006802	chr3:161921063-162599175	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv877728	chr3:162085820-162236885	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv877732	chr3:162113116-162236885	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv877735	chr3:162123179-162380954	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv460932	chr3:162130691-162238239	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv592177	chr3:162130691-162238239	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv592178	chr3:162130691-162251934	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv592182	chr3:162131408-162238239	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv877737	chr3:162132155-162242541	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv877738	chr3:162138826-162236885	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv428424	chr3:162145988-163033943	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv877740	chr3:162159287-162236885	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv877741	chr3:162159287-162236885	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv877742	chr3:162159287-162239185	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv877743	chr3:162177290-162236885	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv1012160	chr3:162182166-162540478	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv1000912	chr3:162186601-162311128	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv592201	chr3:162188625-163142162	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
20	nsv877744	chr3:162198135-162236885	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv877745	chr3:162198135-162237669	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv877746	chr3:162203013-162236885	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
23	nsv877747	chr3:162203013-162237669	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
24	nsv877748	chr3:162208062-162236885	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
25	nsv877749	chr3:162208062-162238239	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
26	nsv877750	chr3:162208062-162239185	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
27	nsv877751	chr3:162208062-162239185	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
28	nsv877752	chr3:162208062-162242541	Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
29	nsv829775	chr3:162211618-162406402	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
30	nsv460949	chr3:162213876-162238239	Enhancers Flanking Active TSS Genic enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
31	nsv877753	chr3:162216666-162239185	Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
32	nsv877754	chr3:162216666-162242541	Enhancers Flanking Active TSS Genic enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
33	nsv470994	chr3:162217993-162945834	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
34	nsv592204	chr3:162217994-162238239	Enhancers Genic enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
35	nsv592205	chr3:162217994-162263832	Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
36	nsv877755	chr3:162218849-162386891	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
37	nsv877756	chr3:162218849-162391801	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
38	nsv877757	chr3:162226534-162391801	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:162236000-162236600	Genic enhancers	Dnd41	blood

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