Variant report

Variant	rs6442134
Chromosome Location	chr3:43045875-43045876
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43042013..43044443-chr3:43044465..43047233,2	K562	blood:
2	chr3:43044130..43046332-chr3:43052045..43054420,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10212191	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10510736	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13087788	0.83[EUR][1000 genomes]
rs2001682	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28435122	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28548208	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2948619	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35110063	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3953390	0.91[EUR][1000 genomes]
rs531888	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs532792	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55701670	0.94[EUR][1000 genomes]
rs55848724	0.81[EUR][1000 genomes]
rs62247060	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62247061	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62247062	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs644534	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6764648	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6783218	0.85[EUR][1000 genomes]
rs6792817	0.81[EUR][1000 genomes]
rs6793871	0.86[EUR][1000 genomes]
rs6794402	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6806427	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs704918	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7633590	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7643433	0.85[EUR][1000 genomes]
rs834177	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs872126	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9311332	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9812262	0.85[EUR][1000 genomes]
rs9821320	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9848904	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9858123	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9863179	0.90[EUR][1000 genomes]
rs9872107	0.84[EUR][1000 genomes]
rs9874514	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv460523	chr3:43025986-43063406	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv590150	chr3:43025986-43063406	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv432417	chr3:43045796-43098296	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43043200-43047000	Weak transcription	Fetal Intestine Large	intestine
2	chr3:43043400-43046800	Weak transcription	Brain Substantia Nigra	brain
3	chr3:43043400-43047000	Weak transcription	Brain Anterior Caudate	brain
4	chr3:43043600-43046200	Weak transcription	NHLF	lung
5	chr3:43043600-43054400	Weak transcription	Placenta	Placenta
6	chr3:43043800-43054600	Weak transcription	Fetal Kidney	kidney
7	chr3:43044000-43047000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:43044200-43046000	Weak transcription	Osteobl	bone
9	chr3:43044200-43046400	Weak transcription	Fetal Muscle Leg	muscle
10	chr3:43044200-43049800	Weak transcription	Ovary	ovary
11	chr3:43044600-43047400	Weak transcription	Liver	Liver
12	chr3:43044600-43052200	Weak transcription	Fetal Stomach	stomach
13	chr3:43044800-43046000	Enhancers	Fetal Thymus	thymus
14	chr3:43044800-43051800	Weak transcription	Brain Hippocampus Middle	brain
15	chr3:43045200-43046600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:43045600-43046600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:43045600-43046600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:43045600-43046600	Enhancers	NHEK	skin
19	chr3:43045600-43047200	Enhancers	HMEC	breast
20	chr3:43045800-43046000	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr3:43045800-43046600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr3:43045800-43046800	Enhancers	Stomach Smooth Muscle	stomach
23	chr3:43045800-43047000	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links