Variant report

Variant	rs62247060
Chromosome Location	chr3:43054603-43054604
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10212191	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10510736	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13087788	0.85[EUR][1000 genomes]
rs17390473	0.82[ASN][1000 genomes]
rs17455760	0.80[ASN][1000 genomes]
rs2001682	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28435122	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28548208	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2948619	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35110063	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3953390	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs531888	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs532792	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55701670	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55848724	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62247061	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62247062	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6442134	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs644534	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66603383	0.80[ASN][1000 genomes]
rs67186096	0.82[ASN][1000 genomes]
rs6764648	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6783218	0.82[EUR][1000 genomes]
rs6793871	0.82[EUR][1000 genomes]
rs6794402	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6806427	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs704918	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7616750	0.80[ASN][1000 genomes]
rs7619227	0.80[ASN][1000 genomes]
rs7624799	0.80[ASN][1000 genomes]
rs7633590	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7643433	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs834177	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs872126	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9311332	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9812262	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9821320	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9848904	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9858123	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9863179	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9872107	0.81[EUR][1000 genomes]
rs9874514	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv460523	chr3:43025986-43063406	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv590150	chr3:43025986-43063406	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv432417	chr3:43045796-43098296	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv18139	chr3:43053229-43059805	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43048200-43056800	Weak transcription	Primary T cells from cord blood	blood
2	chr3:43053000-43056200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:43053000-43057800	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
4	chr3:43053200-43060600	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:43053400-43059400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
6	chr3:43053600-43073200	Weak transcription	Right Atrium	heart
7	chr3:43053800-43058600	ZNF genes & repeats	Fetal Thymus	thymus
8	chr3:43054000-43058200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
9	chr3:43054200-43058800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
10	chr3:43054200-43058800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
11	chr3:43054200-43059000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
12	chr3:43054400-43055000	ZNF genes & repeats	Fetal Stomach	stomach
13	chr3:43054400-43057200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
14	chr3:43054400-43058400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
15	chr3:43054400-43058600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
16	chr3:43054400-43058800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
17	chr3:43054400-43058800	ZNF genes & repeats	Dnd41	blood
18	chr3:43054600-43057200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
19	chr3:43054600-43061600	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links