Variant report

Variant	rs7619227
Chromosome Location	chr3:43050536-43050537
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10212191	0.81[CHB][hapmap]
rs10510736	0.81[CHB][hapmap]
rs13080201	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17390473	1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs17455509	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17455760	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17469719	0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2001682	0.81[CHB][hapmap]
rs2062517	0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs2948619	0.81[CHB][hapmap]
rs34100558	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35946401	0.81[ASN][1000 genomes]
rs3953390	0.93[ASN][1000 genomes]
rs531888	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs55701670	0.91[ASN][1000 genomes]
rs55848724	0.89[ASN][1000 genomes]
rs56292257	0.95[AFR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62247060	0.80[ASN][1000 genomes]
rs644534	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs66603383	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67186096	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6764648	0.84[CHB][hapmap]
rs6783218	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6792817	0.96[ASN][1000 genomes]
rs6793871	0.87[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6794402	0.81[CHB][hapmap]
rs6806427	0.81[CHB][hapmap]
rs6807814	0.93[ASN][1000 genomes]
rs7616750	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7624799	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7633590	0.81[CHB][hapmap]
rs7634125	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7637698	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7643433	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs834177	0.81[CHB][hapmap]
rs872126	0.81[CHB][hapmap]
rs9311332	0.86[CHB][hapmap]
rs9812262	0.93[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs9821320	0.81[CHB][hapmap]
rs9848904	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs9858123	0.83[ASN][1000 genomes]
rs9863179	0.95[ASN][1000 genomes]
rs9872107	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv460523	chr3:43025986-43063406	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv590150	chr3:43025986-43063406	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv432417	chr3:43045796-43098296	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43043600-43054400	Weak transcription	Placenta	Placenta
2	chr3:43043800-43054600	Weak transcription	Fetal Kidney	kidney
3	chr3:43044600-43052200	Weak transcription	Fetal Stomach	stomach
4	chr3:43044800-43051800	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:43046600-43053000	Weak transcription	Fetal Muscle Leg	muscle
6	chr3:43048200-43056800	Weak transcription	Primary T cells from cord blood	blood
7	chr3:43048800-43053400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr3:43049600-43053000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr3:43050000-43053000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links