Variant report

Variant	rs7637698
Chromosome Location	chr3:43034398-43034399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43034015..43036894-chr3:43051666..43054452,2	K562	blood:
2	chr3:43032109..43034625-chr3:43036764..43039846,3	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10212191	0.81[CHB][hapmap]
rs10510736	0.81[CHB][hapmap]
rs13080201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17390473	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17455509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17455760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17469719	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2001682	0.81[CHB][hapmap]
rs2062517	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs2948619	0.81[CHB][hapmap]
rs34100558	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3953390	0.88[ASN][1000 genomes]
rs531888	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs55701670	0.86[ASN][1000 genomes]
rs55848724	0.84[ASN][1000 genomes]
rs56292257	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs644534	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs66603383	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67186096	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6764648	0.84[CHB][hapmap]
rs6783218	0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6792817	0.97[ASN][1000 genomes]
rs6793871	0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6794402	0.81[CHB][hapmap]
rs6806427	0.81[CHB][hapmap]
rs6807814	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs704903	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs7616750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7619227	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7624799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7633590	0.81[CHB][hapmap]
rs7634125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7643433	0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs834177	0.81[CHB][hapmap]
rs872126	0.81[CHB][hapmap]
rs9311332	0.86[CHB][hapmap]
rs9812262	0.93[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs9821320	0.81[CHB][hapmap]
rs9848904	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs9863179	0.89[ASN][1000 genomes]
rs9872107	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv460523	chr3:43025986-43063406	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv590150	chr3:43025986-43063406	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43022000-43037000	Weak transcription	Right Atrium	heart
2	chr3:43023000-43037800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr3:43030800-43037800	Weak transcription	Liver	Liver
4	chr3:43032000-43034400	Enhancers	Brain Hippocampus Middle	brain
5	chr3:43032200-43034400	Enhancers	Brain Anterior Caudate	brain
6	chr3:43032400-43034600	Enhancers	Brain Cingulate Gyrus	brain
7	chr3:43032600-43034600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:43032600-43034600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:43032600-43040800	Weak transcription	Placenta	Placenta
10	chr3:43032800-43034600	Enhancers	Brain Substantia Nigra	brain
11	chr3:43033400-43038200	Weak transcription	Pancreas	Pancrea
12	chr3:43033400-43039600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:43033600-43038200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr3:43033800-43037200	Weak transcription	Fetal Muscle Leg	muscle
15	chr3:43033800-43037600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr3:43034000-43038000	Weak transcription	Adipose Nuclei	Adipose
17	chr3:43034000-43038000	Weak transcription	Ovary	ovary
18	chr3:43034000-43038200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr3:43034000-43038400	Weak transcription	Esophagus	oesophagus
20	chr3:43034200-43036800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr3:43034200-43037400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr3:43034200-43037600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr3:43034200-43037600	Weak transcription	Brain Angular Gyrus	brain
24	chr3:43034200-43037600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr3:43034200-43043400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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