Variant report

Variant	rs34100558
Chromosome Location	chr3:43038950-43038951
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43032109..43034625-chr3:43036764..43039846,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs13080201	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17390473	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17455509	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17455760	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3953390	0.91[ASN][1000 genomes]
rs55701670	0.89[ASN][1000 genomes]
rs55848724	0.87[ASN][1000 genomes]
rs56292257	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66603383	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67186096	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6783218	0.96[ASN][1000 genomes]
rs6792817	0.96[ASN][1000 genomes]
rs6793871	0.91[ASN][1000 genomes]
rs6807814	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs704903	0.86[EUR][1000 genomes]
rs7616750	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7619227	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7624799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7634125	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7637698	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7643433	0.88[ASN][1000 genomes]
rs9812262	0.88[ASN][1000 genomes]
rs9858123	0.81[ASN][1000 genomes]
rs9863179	0.92[ASN][1000 genomes]
rs9872107	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv460523	chr3:43025986-43063406	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv590150	chr3:43025986-43063406	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43032600-43040800	Weak transcription	Placenta	Placenta
2	chr3:43033400-43039600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:43034200-43043400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:43036000-43039200	Enhancers	Brain Anterior Caudate	brain
5	chr3:43037000-43039200	Enhancers	Brain Cingulate Gyrus	brain
6	chr3:43037200-43044200	Enhancers	Fetal Muscle Leg	muscle
7	chr3:43037400-43039400	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr3:43037400-43039400	Enhancers	Fetal Stomach	stomach
9	chr3:43037600-43039200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr3:43037600-43039400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr3:43037800-43044600	Enhancers	Liver	Liver
12	chr3:43038000-43039600	Enhancers	Ovary	ovary
13	chr3:43038000-43039600	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr3:43038000-43040000	Enhancers	Rectal Smooth Muscle	rectum
15	chr3:43038200-43039600	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr3:43038400-43039000	Enhancers	Esophagus	oesophagus
17	chr3:43038400-43039400	Weak transcription	Right Atrium	heart
18	chr3:43038400-43039600	Enhancers	Colon Smooth Muscle	Colon
19	chr3:43038400-43043400	Enhancers	Brain Substantia Nigra	brain
20	chr3:43038600-43040600	Weak transcription	Brain Angular Gyrus	brain
21	chr3:43038600-43040600	Enhancers	Stomach Smooth Muscle	stomach
22	chr3:43038600-43040800	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr3:43038600-43040800	Weak transcription	Pancreas	Pancrea
24	chr3:43038800-43039200	Weak transcription	Right Ventricle	heart
25	chr3:43038800-43039800	Weak transcription	Brain Hippocampus Middle	brain
26	chr3:43038800-43040000	Weak transcription	Fetal Muscle Trunk	muscle
27	chr3:43038800-43040600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr3:43038800-43040800	Weak transcription	Adipose Nuclei	Adipose
29	chr3:43038800-43040800	Weak transcription	Psoas Muscle	Psoas
30	chr3:43038800-43042400	Weak transcription	Lung	lung

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