Variant report

Variant	rs6443611
Chromosome Location	chr3:178715666-178715667
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11720081	0.85[ASN][1000 genomes]
rs13072825	0.95[ASN][1000 genomes]
rs13094954	0.95[ASN][1000 genomes]
rs4280676	0.95[ASN][1000 genomes]
rs4315724	0.95[ASN][1000 genomes]
rs4505756	0.95[ASN][1000 genomes]
rs4626139	0.95[ASN][1000 genomes]
rs4955796	0.95[ASN][1000 genomes]
rs7429173	0.95[ASN][1000 genomes]
rs7652668	0.95[ASN][1000 genomes]
rs7652946	0.95[ASN][1000 genomes]
rs9878489	1.00[CHB][hapmap]
rs9878734	0.80[EUR][1000 genomes]
rs9882743	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998253	chr3:178622707-179196274	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv536814	chr3:178622707-179196274	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv461026	chr3:178661814-178886609	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv592649	chr3:178661814-178886609	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178706400-178718600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr3:178707000-178718800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr3:178708400-178718600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:178708600-178726200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:178708800-178737800	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:178709200-178724400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:178709400-178721600	Weak transcription	Primary B cells from cord blood	blood
8	chr3:178709600-178724800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:178711400-178717800	Weak transcription	GM12878-XiMat	blood
10	chr3:178711800-178722600	Weak transcription	Gastric	stomach
11	chr3:178712400-178719200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:178713000-178719000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:178713000-178723000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr3:178713200-178715800	Weak transcription	HSMM	muscle
15	chr3:178713200-178718400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:178713200-178718400	Weak transcription	Primary T cells from cord blood	blood
17	chr3:178713200-178725000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:178714600-178716600	Strong transcription	Cortex derived primary cultured neurospheres	brain
19	chr3:178715000-178715800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:178715000-178715800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:178715000-178715800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
22	chr3:178715000-178715800	ZNF genes & repeats	Aorta	Aorta
23	chr3:178715200-178718600	Weak transcription	HSMMtube	muscle
24	chr3:178715200-178721800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr3:178715400-178718400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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