Variant report

Variant	rs6446296
Chromosome Location	chr3:49838052-49838053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:49759227..49762200-chr3:49837244..49838747,2	MCF-7	breast:
2	chr3:49838010..49840622-chr3:49875509..49877807,2	MCF-7	breast:
3	chr3:49822915..49825593-chr3:49837367..49840860,3	K562	blood:
4	chr3:49838036..49840305-chr3:49938057..49940452,2	MCF-7	breast:
5	chr3:49835114..49838114-chr3:49838714..49841176,3	K562	blood:
6	chr3:49837665..49841605-chr3:49939148..49941365,3	K562	blood:
7	chr3:49830703..49832221-chr3:49836417..49838568,2	K562	blood:
8	chr3:49830703..49832538-chr3:49835822..49838568,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000176095	Chromatin interaction
ENSG00000228008	Chromatin interaction
ENSG00000173540	Chromatin interaction
ENSG00000185614	Chromatin interaction
ENSG00000164078	Chromatin interaction
ENSG00000187492	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6446297	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6446298	0.92[ASN][1000 genomes]
rs73077175	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1796352	chr3:49687101-49949959	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv834688	chr3:49811115-50019299	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv1809827	chr3:49812331-49934179	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv876766	chr3:49817450-49961780	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6446296	RBM6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49825600-49840000	Weak transcription	Spleen	Spleen
2	chr3:49833200-49838800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:49833400-49838800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:49835200-49839800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:49836200-49838600	Enhancers	HepG2	liver
6	chr3:49837400-49839800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr3:49837400-49840000	Weak transcription	NHLF	lung
8	chr3:49837600-49839000	Weak transcription	K562	blood
9	chr3:49837600-49839200	Weak transcription	Placenta	Placenta
10	chr3:49837600-49839400	Weak transcription	NHEK	skin
11	chr3:49837600-49839800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:49837600-49839800	Weak transcription	A549	lung
13	chr3:49837600-49839800	Weak transcription	Hela-S3	cervix
14	chr3:49837600-49839800	Weak transcription	HSMM	muscle
15	chr3:49837600-49840000	Weak transcription	Adipose Nuclei	Adipose
16	chr3:49837600-49840000	Weak transcription	Esophagus	oesophagus
17	chr3:49837600-49840000	Weak transcription	HMEC	breast
18	chr3:49837800-49838800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:49837800-49839800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:49837800-49840000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:49838000-49839800	Weak transcription	Placenta Amnion	Placenta Amnion

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