Variant report

Variant	rs73077175
Chromosome Location	chr3:49774658-49774659
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:49774405..49776029-chr3:49777710..49781166,3	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6446296	0.86[ASN][1000 genomes]
rs6446297	0.83[ASN][1000 genomes]
rs6446298	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1796352	chr3:49687101-49949959	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv967216	chr3:49764885-49776535	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs73077175	RBM6	cis	Artery Tibial	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49762000-49775000	Weak transcription	Psoas Muscle	Psoas
2	chr3:49762000-49778000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:49762400-49776800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:49762400-49781600	Strong transcription	Fetal Stomach	stomach
5	chr3:49762600-49776400	Strong transcription	Fetal Brain Female	brain
6	chr3:49762600-49776800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:49762600-49777000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:49762600-49777200	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr3:49762600-49777600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:49762600-49781800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr3:49762600-49785200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:49762600-49809000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr3:49762800-49775600	Strong transcription	Fetal Thymus	thymus
14	chr3:49762800-49776400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr3:49762800-49776600	Strong transcription	Cortex derived primary cultured neurospheres	brain
16	chr3:49763000-49776400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:49763000-49776600	Strong transcription	Placenta	Placenta
18	chr3:49763000-49776800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr3:49763000-49784800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:49763200-49776400	Strong transcription	Dnd41	blood
21	chr3:49764000-49776000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr3:49764000-49776400	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr3:49764000-49781800	Strong transcription	Fetal Muscle Leg	muscle
24	chr3:49764200-49776600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr3:49764200-49776600	Strong transcription	Primary T cells from cord blood	blood
26	chr3:49764800-49776600	Strong transcription	Fetal Muscle Trunk	muscle
27	chr3:49765800-49775200	Weak transcription	Stomach Mucosa	stomach
28	chr3:49765800-49775400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr3:49765800-49785800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr3:49767400-49775800	Strong transcription	Liver	Liver
31	chr3:49767400-49776400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr3:49767400-49776400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr3:49767400-49776400	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr3:49767400-49776400	Strong transcription	Adipose Nuclei	Adipose
35	chr3:49767400-49777600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr3:49767600-49775800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr3:49767600-49776000	Strong transcription	GM12878-XiMat	blood
38	chr3:49767600-49776400	Strong transcription	Ovary	ovary
39	chr3:49767600-49776400	Strong transcription	Osteobl	bone
40	chr3:49767600-49776600	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr3:49767600-49776600	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr3:49767600-49776800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr3:49767600-49781400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr3:49767600-49787800	Strong transcription	Duodenum Mucosa	Duodenum
45	chr3:49767800-49776200	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr3:49767800-49776200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr3:49767800-49776200	Strong transcription	Skeletal Muscle Male	skeletal muscle
48	chr3:49767800-49776400	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr3:49767800-49776400	Strong transcription	Primary hematopoietic stem cells	blood
50	chr3:49767800-49776600	Strong transcription	HUES6 Cell Line	embryonic stem cell

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