Variant report

Variant	rs6451287
Chromosome Location	chr5:36419488-36419489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36411883..36414193-chr5:36418548..36420593,2	MCF-7	breast:
2	chr5:36415024..36418425-chr5:36419163..36425113,5	K562	blood:

rs_ID	r²[population]
rs4242264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4580803	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6871282	0.84[ASN][1000 genomes]
rs6871434	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36415600-36422600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr5:36415600-36423000	Weak transcription	Fetal Kidney	kidney
3	chr5:36415600-36423200	Weak transcription	Brain Anterior Caudate	brain
4	chr5:36416200-36420400	Enhancers	K562	blood
5	chr5:36416600-36420000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:36416800-36419800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:36416800-36419800	Enhancers	NHEK	skin
8	chr5:36416800-36423600	Weak transcription	Fetal Muscle Leg	muscle
9	chr5:36417000-36420200	Enhancers	Stomach Mucosa	stomach
10	chr5:36417200-36419600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:36417200-36420200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:36417400-36420400	Enhancers	Fetal Intestine Small	intestine
13	chr5:36417600-36419800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr5:36417600-36419800	Enhancers	Fetal Intestine Large	intestine
15	chr5:36418200-36420200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
16	chr5:36418200-36420200	Enhancers	Duodenum Mucosa	Duodenum
17	chr5:36418600-36419600	Weak transcription	Small Intestine	intestine
18	chr5:36418600-36420000	Enhancers	Liver	Liver
19	chr5:36418600-36420200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
20	chr5:36418600-36420200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
21	chr5:36418800-36420200	Enhancers	Hela-S3	cervix
22	chr5:36418800-36422400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr5:36418800-36423000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr5:36419000-36419800	Enhancers	Primary T cells fromperipheralblood	blood
25	chr5:36419000-36419800	Enhancers	Esophagus	oesophagus
26	chr5:36419000-36422800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr5:36419000-36423000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr5:36419200-36420200	Enhancers	Primary hematopoietic stem cells	blood
29	chr5:36419200-36420200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr5:36419200-36422600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr5:36419200-36422600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr5:36419400-36420000	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr5:36419400-36420200	Enhancers	Primary T cells from cord blood	blood
34	chr5:36419400-36420200	Enhancers	Fetal Thymus	thymus
35	chr5:36419400-36420400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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