Variant report

Variant	rs6453262
Chromosome Location	chr5:76208673-76208674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10447163	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1700655	0.82[ASN][1000 genomes]
rs1700657	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1700658	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2359426	0.80[AMR][1000 genomes]
rs2359427	0.81[AMR][1000 genomes]
rs2657047	0.82[AMR][1000 genomes]
rs6871700	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6890905	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6896257	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019669	chr5:75836365-76477788	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3393424	chr5:76122720-76287744	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv34133	chr5:76138696-76239330	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv1027236	chr5:76190936-76414733	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv830355	chr5:76194722-76368020	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:76197600-76212000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:76199400-76208800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:76205200-76209400	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr5:76205200-76209600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:76205200-76209800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr5:76205600-76209600	Weak transcription	Liver	Liver
7	chr5:76206600-76209400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr5:76208200-76209800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr5:76208400-76208800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:76208400-76209000	Enhancers	Adipose Nuclei	Adipose
11	chr5:76208400-76209800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr5:76208600-76209800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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