Variant report

Variant	rs2359427
Chromosome Location	chr5:76194625-76194626
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10038878	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10063816	0.88[CEU][hapmap]
rs10070865	0.84[CEU][hapmap]
rs10447163	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10462548	0.84[CEU][hapmap];0.82[TSI][hapmap]
rs10942798	0.91[EUR][1000 genomes]
rs11742803	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12188004	0.84[TSI][hapmap]
rs12517004	0.91[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs12519617	0.91[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12656576	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13170714	0.94[EUR][1000 genomes]
rs13186835	0.95[EUR][1000 genomes]
rs1320306	0.86[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.88[TSI][hapmap];0.83[ASN][1000 genomes]
rs1320309	0.88[CEU][hapmap];0.82[TSI][hapmap]
rs1700655	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1700657	0.80[EUR][1000 genomes]
rs1700658	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1715764	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2359426	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2359658	0.90[TSI][hapmap];0.81[AMR][1000 genomes]
rs2657047	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2681668	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2681669	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35305638	0.94[EUR][1000 genomes]
rs35871779	0.94[EUR][1000 genomes]
rs3903346	0.86[EUR][1000 genomes]
rs4254887	0.94[EUR][1000 genomes]
rs58093808	0.91[ASN][1000 genomes]
rs60192097	0.91[ASN][1000 genomes]
rs62363088	0.91[ASN][1000 genomes]
rs62363089	0.94[ASN][1000 genomes]
rs62363095	0.94[ASN][1000 genomes]
rs6414971	0.88[CEU][hapmap]
rs6453262	0.81[AMR][1000 genomes]
rs6869909	0.80[CEU][hapmap]
rs6871700	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6872982	0.88[ASN][1000 genomes]
rs6879129	0.91[EUR][1000 genomes]
rs6884425	0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6887216	0.94[EUR][1000 genomes]
rs6890905	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6896257	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7722773	0.91[TSI][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019669	chr5:75836365-76477788	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3393424	chr5:76122720-76287744	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv34133	chr5:76138696-76239330	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv1027236	chr5:76190936-76414733	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:76185400-76195200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:76187800-76196800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:76192600-76195000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr5:76193800-76199400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr5:76194000-76195200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
6	chr5:76194200-76198400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr5:76194600-76195600	Strong transcription	Monocytes-CD14+_RO01746	blood

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