Variant report

Variant	rs7722773
Chromosome Location	chr5:76187308-76187309
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10462548	0.86[TSI][hapmap]
rs10942798	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11746500	0.90[ASN][1000 genomes]
rs12188004	0.83[CEU][hapmap];0.84[TSI][hapmap]
rs12517004	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs12519617	0.87[CEU][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes]
rs12521017	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12656576	0.81[EUR][1000 genomes]
rs13163806	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13170714	0.88[ASN][1000 genomes]
rs13186835	0.89[ASN][1000 genomes]
rs1320306	0.87[CEU][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs1320309	0.82[GIH][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap]
rs2359426	0.81[EUR][1000 genomes]
rs2359427	0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs2359428	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2359658	0.82[CEU][hapmap];0.86[TSI][hapmap]
rs35305638	0.87[ASN][1000 genomes]
rs35799724	0.86[ASN][1000 genomes]
rs35807598	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35871779	0.87[ASN][1000 genomes]
rs4254887	0.88[ASN][1000 genomes]
rs56975406	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57425095	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58093808	0.84[EUR][1000 genomes]
rs60192097	0.84[EUR][1000 genomes]
rs62363086	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62363087	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62363088	0.84[EUR][1000 genomes]
rs62363089	0.84[EUR][1000 genomes]
rs62363095	0.91[EUR][1000 genomes]
rs6872982	0.84[EUR][1000 genomes]
rs6879129	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6884425	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs6887216	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019669	chr5:75836365-76477788	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3393424	chr5:76122720-76287744	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv34133	chr5:76138696-76239330	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv524024	chr5:76166018-76187777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:76171600-76192600	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr5:76177800-76187400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:76183200-76188800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr5:76183400-76194200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr5:76184800-76188000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:76185400-76195200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr5:76185800-76191800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:76186400-76187800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr5:76187200-76188400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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