Variant report

Variant	rs4254887
Chromosome Location	chr5:76217535-76217536
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:76216275..76218652-chr5:76220966..76223336,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10038878	0.98[EUR][1000 genomes]
rs10063816	0.82[EUR][1000 genomes]
rs10447163	0.90[EUR][1000 genomes]
rs10942798	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11742803	0.98[EUR][1000 genomes]
rs11746500	0.82[ASN][1000 genomes]
rs12656576	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13163806	0.86[ASN][1000 genomes]
rs13170714	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13186835	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1700653	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1700654	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1700655	0.98[EUR][1000 genomes]
rs1700658	0.90[EUR][1000 genomes]
rs1715764	0.99[EUR][1000 genomes]
rs2359426	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2359427	0.94[EUR][1000 genomes]
rs2359428	0.88[ASN][1000 genomes]
rs2657047	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2681668	0.94[EUR][1000 genomes]
rs2681669	0.95[EUR][1000 genomes]
rs35305638	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35799724	0.96[ASN][1000 genomes]
rs35807598	0.88[ASN][1000 genomes]
rs35871779	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3903346	0.91[EUR][1000 genomes]
rs56975406	0.82[ASN][1000 genomes]
rs57425095	0.82[ASN][1000 genomes]
rs62363086	0.82[ASN][1000 genomes]
rs62363087	0.82[ASN][1000 genomes]
rs6871700	0.90[EUR][1000 genomes]
rs6879129	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6887216	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6890905	0.90[EUR][1000 genomes]
rs6896257	0.90[EUR][1000 genomes]
rs7722773	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019669	chr5:75836365-76477788	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3393424	chr5:76122720-76287744	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv34133	chr5:76138696-76239330	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv1027236	chr5:76190936-76414733	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv830355	chr5:76194722-76368020	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:76211000-76217800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr5:76216800-76222000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr5:76216800-76222200	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links