Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10038878	0.82[EUR][1000 genomes]
rs10070865	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10462547	0.88[CEU][hapmap]
rs10462548	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11742803	0.81[EUR][1000 genomes]
rs12188004	0.84[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12517004	0.87[YRI][hapmap]
rs12519617	0.81[EUR][1000 genomes]
rs13170714	0.82[EUR][1000 genomes]
rs1320306	0.86[YRI][hapmap];0.81[EUR][1000 genomes]
rs1320307	0.80[CEU][hapmap];0.85[EUR][1000 genomes]
rs1320308	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1320309	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1700655	0.81[EUR][1000 genomes]
rs1715764	0.82[EUR][1000 genomes]
rs1814969	0.92[EUR][1000 genomes]
rs2359427	0.88[CEU][hapmap]
rs2359658	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs2657047	0.81[EUR][1000 genomes]
rs35305638	0.82[EUR][1000 genomes]
rs35871779	0.82[EUR][1000 genomes]
rs4254887	0.82[EUR][1000 genomes]
rs55863251	0.84[EUR][1000 genomes]
rs6414971	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6869909	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs6874234	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs6884425	0.89[YRI][hapmap]
rs9293698	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019669	chr5:75836365-76477788	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3393424	chr5:76122720-76287744	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv34133	chr5:76138696-76239330	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv524024	chr5:76166018-76187777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:76153000-76174400	Weak transcription	Primary T cells from cord blood	blood
2	chr5:76169600-76172800	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr5:76170600-76173400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr5:76170600-76174800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:76171000-76172800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:76171000-76182400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr5:76171200-76175800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:76171600-76177400	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr5:76171600-76192600	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr5:76171800-76172800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr5:76172000-76173000	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr5:76172200-76172800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr5:76172200-76173200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr5:76172600-76173400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search: