Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10063816	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10440683	0.80[EUR][1000 genomes]
rs10440684	0.80[EUR][1000 genomes]
rs10462547	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs10462548	0.92[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12188004	0.80[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12517004	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs12521017	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12653515	0.80[EUR][1000 genomes]
rs13163806	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1320307	0.82[EUR][1000 genomes]
rs1320308	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1320309	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1814969	0.90[EUR][1000 genomes]
rs2359427	0.84[CEU][hapmap]
rs2359658	0.82[EUR][1000 genomes]
rs55863251	0.82[EUR][1000 genomes]
rs56975406	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57425095	0.81[EUR][1000 genomes]
rs62363087	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6414971	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs6869909	0.88[CEU][hapmap]
rs6874234	0.87[CEU][hapmap]
rs6884425	0.80[CEU][hapmap]
rs7736104	0.81[EUR][1000 genomes]
rs9293697	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019669	chr5:75836365-76477788	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3393424	chr5:76122720-76287744	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv34133	chr5:76138696-76239330	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv524024	chr5:76166018-76187777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:76153000-76174400	Weak transcription	Primary T cells from cord blood	blood
2	chr5:76170600-76173400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:76170600-76174800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr5:76171000-76182400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr5:76171200-76175800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:76171600-76177400	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr5:76171600-76192600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr5:76172600-76173400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:76172800-76173400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:76172800-76174000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr5:76173200-76173400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr5:76173200-76173400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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