Variant report

Variant	rs62363088
Chromosome Location	chr5:76179930-76179931
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10038878	0.90[ASN][1000 genomes]
rs10447163	0.82[ASN][1000 genomes]
rs11742803	0.86[ASN][1000 genomes]
rs12188004	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12517004	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12519617	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12521017	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12656576	0.85[ASN][1000 genomes]
rs13163806	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1320306	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1320307	0.91[EUR][1000 genomes]
rs1700658	0.82[ASN][1000 genomes]
rs1715764	0.81[ASN][1000 genomes]
rs2359426	0.91[ASN][1000 genomes]
rs2359427	0.91[ASN][1000 genomes]
rs2359428	0.87[EUR][1000 genomes]
rs2359658	0.91[EUR][1000 genomes]
rs2657047	0.81[ASN][1000 genomes]
rs2681668	0.81[ASN][1000 genomes]
rs2681669	0.81[ASN][1000 genomes]
rs35807598	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56975406	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs57425095	0.99[EUR][1000 genomes]
rs58093808	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60192097	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62363086	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62363087	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62363089	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62363095	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6871700	0.82[ASN][1000 genomes]
rs6872982	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6884425	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6890905	0.82[ASN][1000 genomes]
rs6896257	0.82[ASN][1000 genomes]
rs7722773	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019669	chr5:75836365-76477788	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3393424	chr5:76122720-76287744	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv34133	chr5:76138696-76239330	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv524024	chr5:76166018-76187777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:76171000-76182400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr5:76171600-76192600	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr5:76174600-76186400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr5:76175800-76184800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr5:76175800-76187200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr5:76177800-76187400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr5:76178400-76180200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:76178600-76183400	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links