Variant report

Variant	rs645361
Chromosome Location	chr6:119461258-119461259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119460572..119463135-chr6:119668179..119670876,2	K562	blood:
2	chr6:119460972..119463917-chr6:119467020..119470933,5	K562	blood:
3	chr6:119459184..119461563-chr6:119481214..119483358,2	K562	blood:
4	chr6:119455611..119461723-chr6:119466568..119469851,5	K562	blood:
5	chr6:119450079..119455479-chr6:119456627..119461758,6	K562	blood:

Variant related genes	Relation type
ENSG00000111879	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10223503	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1150130	1.00[EUR][1000 genomes]
rs1150131	1.00[EUR][1000 genomes]
rs593386	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs601734	1.00[EUR][1000 genomes]
rs615414	1.00[EUR][1000 genomes]
rs617200	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs637631	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs638083	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs680402	1.00[EUR][1000 genomes]
rs685956	1.00[EUR][1000 genomes]
rs811579	0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv886570	chr6:119450888-119600556	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119450600-119469600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:119451400-119468800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:119457000-119474800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:119457800-119462200	Enhancers	Fetal Muscle Leg	muscle
5	chr6:119458000-119461800	Enhancers	Fetal Lung	lung
6	chr6:119458200-119461400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:119458200-119461600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:119458800-119461800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:119458800-119462000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:119459000-119469000	Weak transcription	Lung	lung
11	chr6:119459200-119468000	Weak transcription	Placenta	Placenta
12	chr6:119459400-119461400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:119459400-119462600	Enhancers	Fetal Heart	heart
14	chr6:119459400-119467800	Weak transcription	NHLF	lung
15	chr6:119459600-119461600	Enhancers	Dnd41	blood
16	chr6:119460000-119461400	Enhancers	GM12878-XiMat	blood
17	chr6:119460000-119462800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr6:119460200-119461600	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr6:119460200-119461800	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr6:119460200-119462000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:119460200-119462400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:119460200-119462600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr6:119460400-119461600	Weak transcription	Fetal Stomach	stomach
24	chr6:119460400-119461800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:119460400-119462800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr6:119460400-119466200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:119460600-119466000	Weak transcription	Primary hematopoietic stem cells	blood
28	chr6:119460800-119463200	Weak transcription	NHDF-Ad	bronchial
29	chr6:119460800-119467600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:119461000-119461600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:119461000-119462000	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr6:119461000-119462400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:119461000-119462800	Enhancers	K562	blood
34	chr6:119461200-119466000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr6:119461200-119466000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:119461200-119466200	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr6:119461200-119466200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr6:119461200-119466400	Weak transcription	Monocytes-CD14+_RO01746	blood

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