Variant report

Variant	rs637631
Chromosome Location	chr6:119453762-119453763
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119453269..119456548-chr6:119464804..119468578,3	MCF-7	breast:
2	chr6:119450079..119455479-chr6:119456627..119461758,6	K562	blood:
3	chr6:119453303..119455487-chr6:119456152..119458253,2	MCF-7	breast:
4	chr6:119452081..119454221-chr6:119663183..119665490,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10223503	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10485001	1.00[CHB][hapmap]
rs11153800	1.00[CHB][hapmap]
rs1150130	1.00[EUR][1000 genomes]
rs1150131	1.00[EUR][1000 genomes]
rs11751945	1.00[CHB][hapmap]
rs11755967	1.00[CHB][hapmap]
rs11759899	1.00[CHB][hapmap]
rs11962938	1.00[CHB][hapmap]
rs12205826	1.00[CHB][hapmap]
rs593386	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs601734	1.00[EUR][1000 genomes]
rs615414	1.00[EUR][1000 genomes]
rs617200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs638083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs645361	0.84[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs680402	1.00[EUR][1000 genomes]
rs685956	1.00[EUR][1000 genomes]
rs6918913	1.00[CHB][hapmap]
rs7754482	1.00[CHB][hapmap]
rs7767198	1.00[CHB][hapmap]
rs811579	0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs926859	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv886570	chr6:119450888-119600556	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119449000-119454400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:119450600-119458800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:119450600-119469600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:119451400-119468800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:119451800-119460400	Weak transcription	HSMMtube	muscle
6	chr6:119452200-119458800	Weak transcription	HepG2	liver
7	chr6:119452400-119457800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:119452600-119454200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr6:119452800-119454000	Enhancers	Osteobl	bone
10	chr6:119452800-119454200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:119452800-119460200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr6:119453000-119454000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:119453000-119454000	Enhancers	Brain Germinal Matrix	brain
14	chr6:119453200-119454000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:119453400-119453800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr6:119453400-119453800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:119453400-119453800	Enhancers	Fetal Lung	lung
18	chr6:119453400-119454000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr6:119453400-119454000	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr6:119453400-119454000	Enhancers	HSMM	muscle
21	chr6:119453400-119454000	Enhancers	NHDF-Ad	bronchial
22	chr6:119453400-119454200	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr6:119453400-119454200	Enhancers	Adipose Nuclei	Adipose
24	chr6:119453400-119454200	Enhancers	K562	blood
25	chr6:119453400-119454200	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr6:119453600-119453800	Enhancers	H1 Cell Line	embryonic stem cell
27	chr6:119453600-119454200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:119453600-119454600	Weak transcription	Pancreas	Pancrea
29	chr6:119453600-119455000	Enhancers	Fetal Muscle Leg	muscle

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