Variant report

Variant	rs6456144
Chromosome Location	chr6:167415605-167415606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:167353995..167356024-chr6:167413983..167416895,2	K562	blood:
2	chr6:167411701..167414538-chr6:167414813..167420401,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272980	Chromatin interaction
ENSG00000227598	Chromatin interaction
ENSG00000213066	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1537172	1.00[TSI][hapmap]
rs16899505	1.00[TSI][hapmap]
rs16899790	1.00[EUR][1000 genomes]
rs16899815	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16899817	0.80[MKK][hapmap]
rs1776	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2145959	1.00[EUR][1000 genomes]
rs34544438	1.00[EUR][1000 genomes]
rs35517174	1.00[EUR][1000 genomes]
rs3756831	1.00[EUR][1000 genomes]
rs4709151	1.00[TSI][hapmap]
rs4710117	1.00[TSI][hapmap]
rs57450712	1.00[EUR][1000 genomes]
rs59100209	1.00[EUR][1000 genomes]
rs60175539	1.00[EUR][1000 genomes]
rs61387345	1.00[EUR][1000 genomes]
rs61602553	1.00[EUR][1000 genomes]
rs61712256	1.00[EUR][1000 genomes]
rs6456135	1.00[EUR][1000 genomes]
rs6456142	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6456147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6899812	1.00[EUR][1000 genomes]
rs6905912	0.85[AFR][1000 genomes]
rs6906300	1.00[AMR][1000 genomes]
rs6907391	0.85[AFR][1000 genomes]
rs6916629	1.00[EUR][1000 genomes]
rs6919742	1.00[EUR][1000 genomes]
rs6920058	1.00[EUR][1000 genomes]
rs6920393	1.00[EUR][1000 genomes]
rs6924611	1.00[EUR][1000 genomes]
rs6926041	1.00[AMR][1000 genomes]
rs6933595	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6938521	0.90[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73254674	1.00[EUR][1000 genomes]
rs73788182	1.00[EUR][1000 genomes]
rs73788200	1.00[EUR][1000 genomes]
rs7741161	1.00[EUR][1000 genomes]
rs7744664	0.85[AFR][1000 genomes]
rs7753939	1.00[EUR][1000 genomes]
rs7754502	1.00[MEX][hapmap]
rs7762305	1.00[EUR][1000 genomes]
rs7764064	1.00[EUR][1000 genomes]
rs7775401	1.00[EUR][1000 genomes]
rs7775499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7775521	1.00[EUR][1000 genomes]
rs7776428	1.00[EUR][1000 genomes]
rs9366103	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv948634	chr6:167200671-167838993	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
5	nsv482507	chr6:167282376-167474915	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
6	nsv532074	chr6:167320656-167781977	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
7	nsv1031039	chr6:167324021-167741439	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
8	nsv538543	chr6:167324021-167741439	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
9	nsv1026972	chr6:167335031-167671042	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167413600-167419000	Weak transcription	Ovary	ovary
2	chr6:167413600-167419000	Weak transcription	Spleen	Spleen
3	chr6:167413600-167425000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:167413600-167425000	Weak transcription	Brain Substantia Nigra	brain
5	chr6:167413600-167425000	Weak transcription	Lung	lung
6	chr6:167413600-167425200	Weak transcription	Esophagus	oesophagus
7	chr6:167413600-167428600	Weak transcription	Aorta	Aorta
8	chr6:167413600-167428800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:167413600-167428800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:167413600-167438800	Weak transcription	Right Ventricle	heart
11	chr6:167413600-167449200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:167413600-167452400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr6:167413800-167417400	Weak transcription	Placenta	Placenta
14	chr6:167413800-167419200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:167413800-167419200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr6:167413800-167436800	Weak transcription	HSMMtube	muscle
17	chr6:167414000-167415800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:167414000-167416200	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:167414200-167416200	Strong transcription	Fetal Muscle Trunk	muscle
20	chr6:167414400-167415800	Enhancers	Fetal Heart	heart
21	chr6:167414400-167416000	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:167414400-167416200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr6:167414400-167416200	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr6:167414400-167418600	Weak transcription	A549	lung
25	chr6:167414400-167419000	Weak transcription	Stomach Smooth Muscle	stomach
26	chr6:167414400-167419400	Weak transcription	Brain Hippocampus Middle	brain
27	chr6:167414600-167416200	Enhancers	Fetal Intestine Small	intestine
28	chr6:167414600-167417600	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr6:167414600-167417600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:167414600-167417600	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr6:167414600-167417800	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr6:167414600-167418000	Weak transcription	Adipose Nuclei	Adipose
33	chr6:167414600-167418600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr6:167414600-167418800	Weak transcription	Colon Smooth Muscle	Colon
35	chr6:167414600-167419000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:167414600-167419000	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr6:167414600-167419000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:167414600-167419000	Enhancers	Liver	Liver
39	chr6:167414600-167419000	Weak transcription	Brain Cingulate Gyrus	brain
40	chr6:167414600-167419000	Weak transcription	Colonic Mucosa	Colon
41	chr6:167414600-167419000	Weak transcription	Right Atrium	heart
42	chr6:167414600-167419000	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr6:167414600-167419000	Weak transcription	NHEK	skin
44	chr6:167414600-167419400	Weak transcription	NH-A	brain
45	chr6:167414600-167420400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr6:167414600-167420800	Strong transcription	HSMM	muscle
47	chr6:167414600-167424400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr6:167414600-167425000	Weak transcription	Brain Angular Gyrus	brain
49	chr6:167414600-167425000	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr6:167414600-167425000	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links