Variant report

Variant	rs6456620
Chromosome Location	chr6:24618424-24618425
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs5026270	0.86[AMR][1000 genomes]
rs5026271	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60613681	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6456621	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6911855	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6915373	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6939068	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6939200	0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7743602	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020653	chr6:24557870-24638244	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24614400-24619200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:24616400-24619000	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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