Variant report

Variant	rs645774
Chromosome Location	chr6:56280670-56280671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs635177	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs653872	1.00[ASN][1000 genomes]
rs664992	1.00[ASN][1000 genomes]
rs679020	1.00[ASN][1000 genomes]
rs686202	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830666	chr6:56243743-56419599	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1022577	chr6:56263674-56289698	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56253000-56282600	Weak transcription	Aorta	Aorta
2	chr6:56271400-56284000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:56278000-56280800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:56278200-56280800	Weak transcription	NHLF	lung
5	chr6:56279600-56281000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:56280000-56280800	Enhancers	NHDF-Ad	bronchial
7	chr6:56280400-56282800	Enhancers	HepG2	liver
8	chr6:56280600-56280800	Enhancers	Osteobl	bone
9	chr6:56280600-56281000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:56280600-56281000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:56280600-56281000	Enhancers	Fetal Lung	lung
12	chr6:56280600-56281000	Enhancers	Ovary	ovary
13	chr6:56280600-56281000	Enhancers	NH-A	brain
14	chr6:56280600-56281200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:56280600-56281400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:56280600-56281400	Enhancers	Fetal Stomach	stomach
17	chr6:56280600-56281400	Enhancers	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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