Variant report

Variant	rs6458005
Chromosome Location	chr6:37592492-37592493
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37467585..37469097-chr6:37592416..37594096,2	K562	blood:
2	chr6:37587258..37590079-chr6:37590589..37593405,2	K562	blood:
3	chr6:37590156..37593424-chr6:37597234..37601597,4	K562	blood:
4	chr6:37591872..37593906-chr6:37631724..37634483,2	K562	blood:
5	chr6:37592329..37594327-chr6:37602082..37603969,2	MCF-7	breast:
6	chr6:37590338..37593047-chr6:37604192..37605778,2	K562	blood:
7	chr6:37583299..37586472-chr6:37588985..37593847,4	K562	blood:

Variant related genes	Relation type
ENSG00000198937	Chromatin interaction
ENSG00000112139	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs61608890	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73413337	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7741051	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv602955	chr6:37581200-37599962	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37586600-37593800	Enhancers	Primary B cells from cord blood	blood
2	chr6:37587000-37592600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:37587200-37592800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:37589200-37593200	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr6:37589800-37593000	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr6:37590600-37592600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
7	chr6:37590600-37592600	Enhancers	HMEC	breast
8	chr6:37590600-37592800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:37590600-37593400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:37591000-37593400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:37591000-37593400	Enhancers	NHDF-Ad	bronchial
12	chr6:37591200-37592600	Weak transcription	GM12878-XiMat	blood
13	chr6:37591200-37592800	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr6:37591600-37592600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:37591600-37592600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:37591600-37593200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:37591600-37593600	Enhancers	NH-A	brain
18	chr6:37591800-37592600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:37592000-37592600	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
20	chr6:37592000-37592600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
21	chr6:37592000-37592800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:37592000-37592800	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
23	chr6:37592000-37593200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr6:37592000-37593200	Enhancers	Fetal Brain Male	brain
25	chr6:37592000-37593600	Enhancers	Primary hematopoietic stem cells	blood
26	chr6:37592000-37593600	Enhancers	Gastric	stomach
27	chr6:37592000-37593800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
28	chr6:37592000-37593800	Enhancers	Spleen	Spleen
29	chr6:37592200-37592600	Bivalent Enhancer	Colonic Mucosa	Colon
30	chr6:37592200-37592600	Bivalent Enhancer	Duodenum Mucosa	Duodenum
31	chr6:37592200-37592600	Bivalent Enhancer	K562	blood
32	chr6:37592200-37592800	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
33	chr6:37592200-37593000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
34	chr6:37592200-37593200	Flanking Active TSS	Hela-S3	cervix
35	chr6:37592200-37593600	Bivalent Enhancer	Placenta	Placenta
36	chr6:37592200-37593800	Bivalent Enhancer	Stomach Mucosa	stomach
37	chr6:37592400-37592600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:37592400-37592600	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
39	chr6:37592400-37592600	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr6:37592400-37592600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr6:37592400-37592600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:37592400-37592600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr6:37592400-37592600	Bivalent Enhancer	Adipose Nuclei	Adipose
44	chr6:37592400-37592600	Enhancers	Brain Cingulate Gyrus	brain
45	chr6:37592400-37592600	Bivalent Enhancer	Brain Hippocampus Middle	brain
46	chr6:37592400-37592600	Enhancers	Brain Inferior Temporal Lobe	brain
47	chr6:37592400-37592600	Bivalent Enhancer	Brain Substantia Nigra	brain
48	chr6:37592400-37592600	Bivalent Enhancer	Fetal Kidney	kidney
49	chr6:37592400-37592600	Bivalent Enhancer	Fetal Muscle Leg	muscle
50	chr6:37592400-37592600	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum

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