Variant report

Variant	rs73413337
Chromosome Location	chr6:37593786-37593787
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37592829..37595564-chr6:37597179..37600558,4	MCF-7	breast:
2	chr6:37593545..37595641-chr6:37601090..37603984,2	K562	blood:
3	chr6:37589204..37591463-chr6:37593402..37596526,3	K562	blood:
4	chr6:37467585..37469097-chr6:37592416..37594096,2	K562	blood:
5	chr6:37592843..37595910-chr6:37605648..37608604,4	K562	blood:
6	chr6:37591872..37593906-chr6:37631724..37634483,2	K562	blood:
7	chr6:37592329..37594327-chr6:37602082..37603969,2	MCF-7	breast:
8	chr6:37536776..37539580-chr6:37592890..37596522,3	MCF-7	breast:
9	chr6:37583299..37586472-chr6:37588985..37593847,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112139	Chromatin interaction
ENSG00000198937	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs61608890	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6458005	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7741051	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv602955	chr6:37581200-37599962	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37586600-37593800	Enhancers	Primary B cells from cord blood	blood
2	chr6:37592000-37593800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
3	chr6:37592000-37593800	Enhancers	Spleen	Spleen
4	chr6:37592200-37593800	Bivalent Enhancer	Stomach Mucosa	stomach
5	chr6:37592400-37593800	Bivalent Enhancer	Fetal Stomach	stomach
6	chr6:37592400-37594400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
7	chr6:37592600-37593800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:37592600-37593800	Enhancers	Fetal Heart	heart
9	chr6:37592600-37593800	Bivalent Enhancer	Fetal Intestine Large	intestine
10	chr6:37592600-37594200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:37592800-37593800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
12	chr6:37592800-37593800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:37592800-37594000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:37592800-37594000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr6:37592800-37595800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:37593000-37595600	Weak transcription	NHLF	lung
17	chr6:37593200-37593800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr6:37593200-37593800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
19	chr6:37593200-37593800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:37593200-37593800	Bivalent Enhancer	Fetal Brain Male	brain
21	chr6:37593200-37593800	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
22	chr6:37593200-37593800	Enhancers	A549	lung
23	chr6:37593200-37595800	Weak transcription	HSMM	muscle
24	chr6:37593400-37593800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:37593400-37593800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:37593400-37594000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
27	chr6:37593400-37594200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr6:37593400-37595600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:37593400-37595600	Weak transcription	NHDF-Ad	bronchial
30	chr6:37593400-37595600	Weak transcription	NHEK	skin
31	chr6:37593400-37595800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:37593400-37598000	Weak transcription	Right Atrium	heart
33	chr6:37593600-37593800	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr6:37593600-37593800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr6:37593600-37593800	Bivalent Enhancer	Fetal Thymus	thymus
36	chr6:37593600-37594000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr6:37593600-37594000	Enhancers	Brain Germinal Matrix	brain
38	chr6:37593600-37594000	Enhancers	Fetal Brain Female	brain
39	chr6:37593600-37594200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr6:37593600-37595600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr6:37593600-37595800	Weak transcription	HMEC	breast
42	chr6:37593600-37595800	Weak transcription	NH-A	brain
43	chr6:37593600-37597200	Weak transcription	Hela-S3	cervix
44	chr6:37593600-37597800	Weak transcription	Esophagus	oesophagus
45	chr6:37593600-37598600	Weak transcription	GM12878-XiMat	blood

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