Variant report

Variant	rs6458304
Chromosome Location	chr6:12491744-12491745
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:12318492..12321476-chr6:12491584..12493874,2	MCF-7	breast:
2	chr6:12484240..12487275-chr6:12491468..12494053,3	MCF-7	breast:
3	chr6:12289897..12292833-chr6:12490091..12491756,2	MCF-7	breast:
4	chr6:12330604..12333158-chr6:12489739..12491762,2	MCF-7	breast:
5	chr6:12321927..12325444-chr6:12488868..12492076,3	MCF-7	breast:
6	chr6:12478042..12480675-chr6:12489995..12492847,2	K562	blood:
7	chr6:12487571..12490407-chr6:12491253..12493684,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000218893	Chromatin interaction
ENSG00000078401	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11969434	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1855528	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60093648	0.93[ASN][1000 genomes]
rs60696643	0.93[ASN][1000 genomes]
rs6458305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914085	0.93[ASN][1000 genomes]
rs6916137	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7773215	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9471916	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9471918	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12489400-12492400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr6:12489600-12493000	Enhancers	NHDF-Ad	bronchial
3	chr6:12489800-12492600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:12490000-12492000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:12490000-12492200	Enhancers	NHLF	lung
6	chr6:12490000-12492400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:12490000-12493000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:12490200-12492200	Enhancers	Primary hematopoietic stem cells	blood
9	chr6:12490200-12493200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:12490200-12493600	Enhancers	Hela-S3	cervix
11	chr6:12490400-12491800	Enhancers	Fetal Intestine Small	intestine
12	chr6:12490400-12492000	Enhancers	HSMM	muscle
13	chr6:12490400-12492200	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr6:12490400-12492200	Enhancers	Osteobl	bone
15	chr6:12490400-12493000	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:12490600-12492200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:12490600-12492200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:12490800-12491800	Enhancers	HSMMtube	muscle
19	chr6:12490800-12492000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:12490800-12492000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:12490800-12492000	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr6:12490800-12492000	Enhancers	Spleen	Spleen
23	chr6:12490800-12492000	Enhancers	HMEC	breast
24	chr6:12490800-12492200	Enhancers	NHEK	skin
25	chr6:12491000-12491800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:12491200-12492200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:12491200-12492400	Enhancers	Placenta	Placenta
28	chr6:12491200-12493200	Enhancers	HUVEC	blood vessel
29	chr6:12491400-12491800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:12491400-12491800	Enhancers	Aorta	Aorta
31	chr6:12491400-12491800	Enhancers	Rectal Smooth Muscle	rectum
32	chr6:12491400-12491800	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr6:12491400-12491800	Enhancers	Small Intestine	intestine
34	chr6:12491400-12492000	Enhancers	Left Ventricle	heart
35	chr6:12491400-12492000	Enhancers	Placenta Amnion	Placenta Amnion
36	chr6:12491400-12492000	Enhancers	Right Atrium	heart
37	chr6:12491600-12491800	Flanking Active TSS	NH-A	brain
38	chr6:12491600-12492000	Flanking Active TSS	A549	lung

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