Variant report

Variant	rs6460186
Chromosome Location	chr7:64272038-64272039
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10215071	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10227053	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10236928	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10243893	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11974747	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154807	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13224405	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13227838	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13247620	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13247815	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1815164	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28841902	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3829004	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58301601	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58685854	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62455060	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62455112	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62455114	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62455115	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62455116	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62455117	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62455120	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62455122	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62455123	0.94[ASN][1000 genomes]
rs62455575	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62455577	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62455579	0.86[ASN][1000 genomes]
rs62455580	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62455581	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62455582	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62455583	0.88[ASN][1000 genomes]
rs62455586	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62456797	0.86[AMR][1000 genomes]
rs62456798	0.86[AMR][1000 genomes]
rs62456799	0.93[AMR][1000 genomes]
rs62456802	1.00[AMR][1000 genomes]
rs62456803	0.93[AMR][1000 genomes]
rs62456823	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62456824	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62456827	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62456837	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62456838	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62456841	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62456842	0.89[ASN][1000 genomes]
rs62456843	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62456844	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62458369	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62458370	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62458371	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62458372	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62458373	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62458374	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62458375	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62458427	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62458428	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62458436	0.83[EUR][1000 genomes]
rs6460207	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6964405	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7797427	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7809677	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422405	chr7:63709739-64632341	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv427787	chr7:63741770-64419520	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv2764000	chr7:63766980-64275251	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
4	esv2755057	chr7:63819849-64345822	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
5	nsv464518	chr7:63881238-64506904	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv607312	chr7:63881238-64506904	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	nsv888271	chr7:63961212-64295884	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
8	nsv888273	chr7:63990100-64291622	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
9	nsv888274	chr7:63990100-64331123	Strong transcription ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
10	nsv888275	chr7:63990100-64468590	Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
11	nsv888276	chr7:63990100-64511564	Strong transcription ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
12	nsv888279	chr7:64094285-64331123	Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
13	nsv1022042	chr7:64226499-64566945	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
14	nsv1026390	chr7:64240323-64414364	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
15	nsv888281	chr7:64250409-64295884	Genic enhancers Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
16	nsv970859	chr7:64267971-64276161	Strong transcription ZNF genes & repeats Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:64255400-64277200	Weak transcription	Aorta	Aorta
2	chr7:64255800-64272600	Weak transcription	NHLF	lung
3	chr7:64255800-64278800	Weak transcription	Placenta	Placenta
4	chr7:64255800-64293200	Weak transcription	NH-A	brain
5	chr7:64255800-64293400	Weak transcription	Psoas Muscle	Psoas
6	chr7:64256000-64285200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:64256000-64294400	Weak transcription	Fetal Kidney	kidney
8	chr7:64256400-64276800	Weak transcription	HMEC	breast
9	chr7:64256800-64277200	Weak transcription	Esophagus	oesophagus
10	chr7:64256800-64277200	Weak transcription	Small Intestine	intestine
11	chr7:64256800-64278800	Weak transcription	Spleen	Spleen
12	chr7:64256800-64283800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr7:64256800-64283800	Weak transcription	Pancreas	Pancrea
14	chr7:64256800-64286200	Weak transcription	Brain Substantia Nigra	brain
15	chr7:64256800-64292200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr7:64257400-64283600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr7:64260200-64277000	Weak transcription	NHEK	skin
18	chr7:64260400-64272400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr7:64260600-64272200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr7:64260600-64272200	Weak transcription	Ovary	ovary
21	chr7:64260600-64286200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr7:64260600-64288800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr7:64260600-64292400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr7:64260800-64277400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr7:64260800-64284000	Weak transcription	Left Ventricle	heart
26	chr7:64260800-64284400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr7:64260800-64286400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr7:64260800-64288600	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr7:64260800-64291400	Weak transcription	Liver	Liver
30	chr7:64261000-64272200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr7:64261000-64295400	Weak transcription	Osteobl	bone
32	chr7:64262400-64277200	Weak transcription	HSMM	muscle
33	chr7:64262800-64291400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr7:64263200-64272200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr7:64263400-64272200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr7:64263400-64284000	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr7:64264600-64272200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr7:64265200-64277200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr7:64265400-64286400	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr7:64266000-64272600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr7:64266200-64272600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr7:64266200-64277200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr7:64266200-64277400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr7:64266200-64277400	Weak transcription	Thymus	Thymus
45	chr7:64267000-64272200	Weak transcription	Fetal Muscle Trunk	muscle
46	chr7:64267600-64277200	Weak transcription	Fetal Stomach	stomach
47	chr7:64268200-64275600	Weak transcription	K562	blood
48	chr7:64268400-64275400	Weak transcription	A549	lung
49	chr7:64268600-64279000	Weak transcription	HepG2	liver
50	chr7:64268600-64286200	Weak transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links