Variant report

Variant	rs3829004
Chromosome Location	chr7:64353931-64353932
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAL1	chr7:64353275-64354032	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:64345757..64347589-chr7:64351014..64353937,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF138-1	chr7:64353928-64354270	NONHSAT121055

Variant related genes	Relation type
ENSG00000189316	TF binding region

Extended variants
information (count: 158 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:140)

rs_ID	r²[population]
rs10215071	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10236928	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10240996	0.87[EUR][1000 genomes]
rs10243893	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10278052	0.87[EUR][1000 genomes]
rs1060382	0.87[EUR][1000 genomes]
rs10807685	0.87[EUR][1000 genomes]
rs11972247	0.87[EUR][1000 genomes]
rs11974747	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11978819	0.87[EUR][1000 genomes]
rs12154807	0.94[ASN][1000 genomes]
rs13222878	0.87[EUR][1000 genomes]
rs13224405	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13227838	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13229671	0.87[EUR][1000 genomes]
rs13229816	0.87[EUR][1000 genomes]
rs13230970	0.87[EUR][1000 genomes]
rs13247620	0.94[ASN][1000 genomes]
rs13247815	0.94[ASN][1000 genomes]
rs1404453	0.87[EUR][1000 genomes]
rs1608713	0.87[EUR][1000 genomes]
rs1608716	0.87[EUR][1000 genomes]
rs1608717	0.81[EUR][1000 genomes]
rs1815164	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1852015	0.87[EUR][1000 genomes]
rs1970879	0.87[EUR][1000 genomes]
rs2177660	0.87[EUR][1000 genomes]
rs28841902	0.89[ASN][1000 genomes]
rs34216774	0.87[EUR][1000 genomes]
rs3807070	0.87[EUR][1000 genomes]
rs3813702	0.84[EUR][1000 genomes]
rs3829812	0.84[EUR][1000 genomes]
rs4607487	0.84[EUR][1000 genomes]
rs4618579	0.87[EUR][1000 genomes]
rs4717229	0.87[EUR][1000 genomes]
rs4718173	0.87[EUR][1000 genomes]
rs4718174	0.87[EUR][1000 genomes]
rs55872770	0.87[EUR][1000 genomes]
rs58301601	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58685854	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62454962	0.84[EUR][1000 genomes]
rs62454964	0.84[EUR][1000 genomes]
rs62455060	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62455112	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62455114	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62455115	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62455116	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62455117	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62455120	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62455122	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62455123	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62455575	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62455577	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62455579	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62455580	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62455581	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62455582	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62455583	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62455586	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62455588	0.87[EUR][1000 genomes]
rs62455631	0.87[EUR][1000 genomes]
rs62455632	0.87[EUR][1000 genomes]
rs62455636	0.87[EUR][1000 genomes]
rs62455639	0.87[EUR][1000 genomes]
rs62455642	0.87[EUR][1000 genomes]
rs62455644	0.87[EUR][1000 genomes]
rs62455990	0.84[EUR][1000 genomes]
rs62455994	0.84[EUR][1000 genomes]
rs62455996	0.84[EUR][1000 genomes]
rs62455997	0.84[EUR][1000 genomes]
rs62455998	0.84[EUR][1000 genomes]
rs62455999	0.84[EUR][1000 genomes]
rs62456001	0.84[EUR][1000 genomes]
rs62456002	0.84[EUR][1000 genomes]
rs62456004	0.84[EUR][1000 genomes]
rs62456007	0.84[EUR][1000 genomes]
rs62456009	0.84[EUR][1000 genomes]
rs62456466	0.87[EUR][1000 genomes]
rs62456467	0.87[EUR][1000 genomes]
rs62456468	0.87[EUR][1000 genomes]
rs62456469	0.87[EUR][1000 genomes]
rs62456470	0.87[EUR][1000 genomes]
rs62456471	0.87[EUR][1000 genomes]
rs62456474	0.84[EUR][1000 genomes]
rs62456475	0.87[EUR][1000 genomes]
rs62456476	0.87[EUR][1000 genomes]
rs62456478	0.87[EUR][1000 genomes]
rs62456480	0.87[EUR][1000 genomes]
rs62456482	0.87[EUR][1000 genomes]
rs62456483	0.84[EUR][1000 genomes]
rs62456484	0.84[EUR][1000 genomes]
rs62456486	0.84[EUR][1000 genomes]
rs62456503	0.84[EUR][1000 genomes]
rs62456504	0.81[EUR][1000 genomes]
rs62456505	0.84[EUR][1000 genomes]
rs62456506	0.84[EUR][1000 genomes]
rs62456508	0.84[EUR][1000 genomes]
rs62456515	0.84[EUR][1000 genomes]
rs62456517	0.84[EUR][1000 genomes]
rs62456519	0.84[EUR][1000 genomes]
rs62456520	0.84[EUR][1000 genomes]
rs62456521	0.81[EUR][1000 genomes]
rs62456526	0.84[EUR][1000 genomes]
rs62456528	0.84[EUR][1000 genomes]
rs62456532	0.84[EUR][1000 genomes]
rs62456823	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62456824	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62456827	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62456837	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62456838	0.94[ASN][1000 genomes]
rs62456841	0.91[ASN][1000 genomes]
rs62456842	0.83[ASN][1000 genomes]
rs62456843	0.91[ASN][1000 genomes]
rs62456844	0.94[ASN][1000 genomes]
rs62457211	0.84[EUR][1000 genomes]
rs62458369	0.94[ASN][1000 genomes]
rs62458370	0.94[ASN][1000 genomes]
rs62458371	0.94[ASN][1000 genomes]
rs62458372	0.92[ASN][1000 genomes]
rs62458373	0.91[ASN][1000 genomes]
rs62458374	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62458375	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62458427	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62458428	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62458436	0.82[EUR][1000 genomes]
rs6460186	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6460207	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6460215	0.87[EUR][1000 genomes]
rs6460218	0.87[EUR][1000 genomes]
rs6460219	0.87[EUR][1000 genomes]
rs6944240	0.87[EUR][1000 genomes]
rs7784273	0.87[EUR][1000 genomes]
rs7790578	0.87[EUR][1000 genomes]
rs7796144	0.87[EUR][1000 genomes]
rs7797427	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7799463	0.87[EUR][1000 genomes]
rs7809677	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7810102	0.87[EUR][1000 genomes]
rs7812013	0.87[EUR][1000 genomes]
rs9638412	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422405	chr7:63709739-64632341	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv427787	chr7:63741770-64419520	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv464518	chr7:63881238-64506904	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv607312	chr7:63881238-64506904	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv888275	chr7:63990100-64468590	Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv888276	chr7:63990100-64511564	Strong transcription ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv1022042	chr7:64226499-64566945	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv1026390	chr7:64240323-64414364	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
9	nsv1033291	chr7:64273434-64406276	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
10	nsv508457	chr7:64286522-64391112	Strong transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
11	esv1797468	chr7:64296309-64356050	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv888282	chr7:64299645-64511564	Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
13	nsv1018967	chr7:64318129-64380869	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	esv3506582	chr7:64323055-64563984	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
15	esv3506583	chr7:64323055-64563984	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
16	nsv1019180	chr7:64329889-64512842	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
17	nsv888283	chr7:64343985-64511564	Weak transcription Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
18	esv2752165	chr7:64345822-65208605	Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:64351200-64363200	Weak transcription	Psoas Muscle	Psoas
2	chr7:64351400-64363000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr7:64351400-64363200	Weak transcription	Brain Angular Gyrus	brain
4	chr7:64352000-64363000	Weak transcription	Ovary	ovary
5	chr7:64352400-64354400	Flanking Active TSS	K562	blood
6	chr7:64352800-64362800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr7:64353000-64363000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:64353200-64354200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:64353200-64363200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr7:64353400-64363000	Weak transcription	Brain Anterior Caudate	brain
11	chr7:64353600-64354400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr7:64353600-64354600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:64353800-64354600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr7:64353800-64363200	Weak transcription	Fetal Brain Male	brain

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